Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N12
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167... 29 2.1
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 29 2.1
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609... 29 2.7
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245... 28 4.8
05_04_0029 - 17321378-17321905,17323348-17323525,17323531-173239... 27 6.3
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533... 27 6.3
01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192... 27 6.3
10_02_0135 + 5674786-5675040,5675179-5675490,5676505-5677010,567... 27 8.4
09_02_0575 + 10845261-10847057 27 8.4
04_02_0002 + 8412568-8412781,8412915-8413015,8413114-8413185,841... 27 8.4
01_06_1039 - 34011133-34012218 27 8.4
>04_04_0396 +
24915880-24916222,24916318-24916577,24916689-24916784,
24916889-24917059,24917262-24917975
Length = 527
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 319 VSVFFLIATFAVYTYLPQLRDLQGMCYICMCISMALGFLSLGILQLSPGFRGEM 480
V+V L+A ++ T+ P D+Q +C + LGF G+L S G +G +
Sbjct: 152 VTVDALVAQNSI-THQPLAADMQSLCGFSSSVGALLGFSISGLLVHSMGSQGAL 204
>03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 145 STRDSPGFVFVEDPNHYCIGQMNRNISNHEEALIPVAVVCFEKISKTNDIE 297
S R+SP F +E H+C+ ++ ++ E L+ ++ K KT +
Sbjct: 901 SGRNSPSFRRMEQHKHWCVNRLLERSNHSLEPLVQAFLLRLSKTIKTKSFQ 951
>04_03_0858 +
20357519-20357573,20358072-20358119,20360675-20360922,
20361152-20361363,20361480-20361741,20361832-20362143
Length = 378
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 334 LIATFAVYTYLPQLRDLQGMCYICMCISMALGF--LSLGILQLSPGFRG 474
L++ FA TY+PQ+R QG Y C+ M +GF S L+L F G
Sbjct: 265 LLSKFAFRTYMPQIRQ-QGE-YGCLHRDMTVGFGKWSWSPLELEDPFAG 311
>08_01_0002 -
20208-20594,21525-21671,21754-21917,22005-22162,
24533-24826,24916-25121,25216-25812,26366-27097
Length = 894
Score = 27.9 bits (59), Expect = 4.8
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 283 TNDIETSGILTLVSVFFLIATFAVYTYLPQLRDLQGMCYICMCISMALGFLSL---GILQ 453
T D + G ++VFF + T +Y LR L G I + + MAL FL L GI+
Sbjct: 311 TFDQYSRGEHLTIAVFFKVLTNGMYRLFSPLRRLPG---IHVMVQMALSFLRLFFRGIIN 367
Query: 454 L 456
L
Sbjct: 368 L 368
>05_04_0029 -
17321378-17321905,17323348-17323525,17323531-17323910,
17323936-17324052
Length = 400
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 220 ISNHEEALIPVAVVCFEKISKTNDIETSGIL-TLVSVFFLIATFAVYTYLP 369
++N+ + PV EK+S T D+E + + L S+ +I+T + +P
Sbjct: 280 LANYTLVIQPVTTAIEEKLSATTDVENNWLTRVLTSIAVVISTVVLACTVP 330
>04_03_0857 +
20352331-20352582,20352740-20352951,20353047-20353308,
20353418-20353726
Length = 344
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 334 LIATFAVYTYLPQLRDLQGMCYICMCISMALGF--LSLGILQLSPGFRG 474
++ FA TY+PQ+R QG Y C+ M +GF S L+L F G
Sbjct: 232 IMPKFAFRTYMPQIRQ-QGE-YSCLHRDMTVGFGKWSWSPLELEDPFAG 278
>01_07_0198 -
41918276-41918408,41918486-41918841,41919091-41919237,
41919666-41921789,41922150-41922344,41922488-41922568,
41923325-41923414,41923507-41923593,41923914-41923961
Length = 1086
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +3
Query: 303 RYIDTCFSVFLDSNFC---CVYIFTATKRSSGYV 395
R++ TC + ++ NFC C + T +SG+V
Sbjct: 515 RFVPTCVAALVEPNFCQVACGHCLTVALTTSGHV 548
>10_02_0135 +
5674786-5675040,5675179-5675490,5676505-5677010,
5677057-5677103,5677457-5677918,5678071-5678294
Length = 601
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 80 TLCWASQYPLGLIICPFGQHCLAEP 6
T CW GL CPF + LA P
Sbjct: 157 TWCWLESMATGLGCCPFTGNILASP 181
>09_02_0575 + 10845261-10847057
Length = 598
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 303 RYIDTCFSVFLDSNFCCVYI 362
RYIDT VF CC++I
Sbjct: 481 RYIDTYIDVFWSPLLCCIFI 500
>04_02_0002 +
8412568-8412781,8412915-8413015,8413114-8413185,
8413267-8413380,8414248-8414269,8414450-8414598,
8415054-8415203,8415369-8415401,8418268-8418474
Length = 353
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = -2
Query: 216 SVHLSNAVVIWIFNEDEPW*ISCGDFVTCKNNIFKQHSSICTGYVNSVLGVAISSRFDNL 37
++ N V FNED ++ GD V I S C Y +G+ + ++ +
Sbjct: 247 AIQYGNGSVAGFFNEDS---VTIGDLVVKDQEIAVWRCSACVNYFTKGIGIVLIGTWEMI 303
Query: 36 PV 31
V
Sbjct: 304 IV 305
>01_06_1039 - 34011133-34012218
Length = 361
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 235 EALIPVAVVCFEKISKTNDIETSGILTLVSVFFLIATFA 351
+AL+PVAV + K + ++S +L ++S+ F +A A
Sbjct: 132 KALMPVAVYSIGVLFKKENFKSSAMLNMLSISFGVAIAA 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,150,293
Number of Sequences: 37544
Number of extensions: 252580
Number of successful extensions: 597
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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