Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_N11
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...   105   2e-24
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    26   2.4  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.2  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   4.3  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    24   9.8  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    24   9.8  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score =  105 bits (253), Expect = 2e-24
 Identities = 46/61 (75%), Positives = 54/61 (88%)
 Frame = +3

Query: 84  AVIKNADMSEEMQQDAVDCATQALENFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 263
           AVIK  DMSE+MQQ+A+  A QA+E F IEKDIAAFIK+EFDKK++PTWHCIVGRNFGS+
Sbjct: 2   AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSF 61

Query: 264 V 266
           V
Sbjct: 62  V 62



 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 20/23 (86%), Positives = 21/23 (91%)
 Frame = +1

Query: 268 THETRHFIYFYLGHVAILLFKSG 336
           THE+RHFIYFYLG VA LLFKSG
Sbjct: 63  THESRHFIYFYLGTVAFLLFKSG 85


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 354 VQTNGLTTLKEQYGDMTQVEVDEVTGLV 271
           +QTNGL  LKE     +Q E+    GLV
Sbjct: 77  LQTNGLVRLKETIRMDSQSEISSTMGLV 104


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 254 WLVRERTRPVTSSTSTW 304
           WLV+ RT+P+TS    W
Sbjct: 333 WLVQLRTKPLTSQKPDW 349



 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 350 CTLVPEFIVSRRTQYYPVPLVCRLSRASP 436
           C L   FI     QY  +PL C L   SP
Sbjct: 254 CALTLSFICIFLAQYTSIPLPCPLQLPSP 282


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 366 SGTRVQTNGLTTLKEQYGDMTQVEVDEVTGLVR 268
           +GTR+  + L+ + EQ  D TQ+       LVR
Sbjct: 691 TGTRISIDNLSCMLEQENDPTQLRTPSPGKLVR 723


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 162 SSLGLVSHNPLHPAASPHSCQHS*LLPYGHTSCQLFDISSEVQE 31
           S + L+ ++PL    S HSC H  ++P      ++  +  E++E
Sbjct: 858 SHILLLYYDPLEFLISIHSCFHLGVIPIPFQIREISQLIGEIEE 901


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 400 GSSSLPPLARFSDSGRVT 453
           G+SSL P+  F ++G+VT
Sbjct: 685 GNSSLKPIYNFCETGKVT 702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,292
Number of Sequences: 5004
Number of extensions: 33923
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)