Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N11
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660 85 3e-17
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749 75 4e-14
01_06_0783 + 31975261-31975398,31975583-31975726 63 1e-10
01_05_0324 - 20946774-20946935,20947301-20947780 61 5e-10
02_04_0361 - 22359278-22359439,22362291-22362728 56 2e-08
01_01_0717 - 5559414-5559435,5559589-5559764,5559876-5559917,556... 31 0.60
12_02_0749 - 22758317-22760407 30 1.0
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 29 2.4
09_04_0338 - 16801189-16801524,16801605-16801679,16801758-168018... 28 3.2
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949... 28 4.2
12_01_1014 - 10309444-10309905 27 7.3
12_01_0504 + 3999157-4000470 27 7.3
>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
Length = 111
Score = 85.0 bits (201), Expect = 3e-17
Identities = 37/58 (63%), Positives = 44/58 (75%)
Frame = +3
Query: 81 KAVIKNADMSEEMQQDAVDCATQALENFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNF 254
K +K+ADM EEM+Q+A D A A E +EKDIA +IKKEFDK + PTWHCIVGRNF
Sbjct: 46 KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNF 103
>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
Length = 135
Score = 74.5 bits (175), Expect = 4e-14
Identities = 34/64 (53%), Positives = 43/64 (67%)
Frame = +3
Query: 69 MCDRKAVIKNADMSEEMQQDAVDCATQALENFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 248
+ K IK+A+M EEM+Q+A D A E +EKDI +IK EFDK + PTWHCIVG
Sbjct: 54 LAGHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYIK-EFDKNHGPTWHCIVGH 112
Query: 249 NFGS 260
NFG+
Sbjct: 113 NFGT 116
>01_06_0783 + 31975261-31975398,31975583-31975726
Length = 93
Score = 62.9 bits (146), Expect = 1e-10
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Frame = +3
Query: 69 MCDRKAVIKNADMSEEMQQDAVDCATQALENFNIE--KDIAAFIKKEFDKKYNPTWHCIV 242
M + KA++++ DM +MQ A+ A +AL+ F++ + IAA IKKEFD + P W C+V
Sbjct: 1 MLEGKAMVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVV 60
Query: 243 GRNFGSY 263
G +FG Y
Sbjct: 61 GASFGCY 67
>01_05_0324 - 20946774-20946935,20947301-20947780
Length = 213
Score = 60.9 bits (141), Expect = 5e-10
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Frame = +3
Query: 99 ADMSEEMQQDAVDCATQA---LENFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYV 266
ADMS MQ A CA ++ L+ F+ + +A +KKEFDK Y PTWHCIVG ++GS+V
Sbjct: 125 ADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPTWHCIVGTSYGSFV 182
>02_04_0361 - 22359278-22359439,22362291-22362728
Length = 199
Score = 55.6 bits (128), Expect = 2e-08
Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 90 IKNADMSEEMQQDAVDCATQALENFNI--EKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 263
++ ADM MQ+ AV A A+ K +A +KKEFD Y P WHCIVG FGSY
Sbjct: 108 VRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDATYGPAWHCIVGTGFGSY 167
Query: 264 V 266
V
Sbjct: 168 V 168
>01_01_0717 -
5559414-5559435,5559589-5559764,5559876-5559917,
5560039-5560080,5560268-5560370,5560466-5560527,
5561638-5561719,5567067-5567353,5568085-5568184,
5568584-5568651,5569819-5569860,5570001-5570032,
5572616-5572652
Length = 364
Score = 30.7 bits (66), Expect = 0.60
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -2
Query: 354 VQTNGLTTLKEQYGDMTQVEVDEVTGLVRSRTSQSCGPRCSAMSDCTSYQIPS 196
VQT ++ L++Q + + VT + S T SCGP S+M++ T+ P+
Sbjct: 63 VQTKQVSDLQQQEAKLCKQSYIRVTCITYSETDLSCGP--SSMTELTAAAAPA 113
>12_02_0749 - 22758317-22760407
Length = 696
Score = 29.9 bits (64), Expect = 1.0
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = -1
Query: 262 YEPKLRPTMQCHVGLYFLSNSFLMKAAMSFSMLKFSRACVAQSTA-----SCCISSLMSA 98
+E L P+ CH LY LS + K A+ F +R + STA SC + L +
Sbjct: 322 HETSLHPSA-CHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMSCALKCLEVS 380
Query: 97 FLITALRSHI 68
L L S I
Sbjct: 381 DLCELLDSFI 390
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 93 KNADMSEEMQQDAVDCATQALENFNIEKDIAAFIKKEFDKKYN 221
+N + EE Q +DC + E F+ E+D IK +KK N
Sbjct: 590 ENCKLREEQIQRIIDCQVKDAEEFDAEQD--ELIKTHEEKKAN 630
>09_04_0338 -
16801189-16801524,16801605-16801679,16801758-16801831,
16801972-16802059,16802185-16802336,16802423-16802582,
16802913-16803128,16803487-16803744,16804202-16804231,
16804738-16804941,16805790-16805855
Length = 552
Score = 28.3 bits (60), Expect = 3.2
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +3
Query: 102 DMSEEMQQDAVDCATQALENFNIEKDIAAFIKKEFDK-----KYNPTWHC---IVGRNFG 257
D + + D D +T+ L N+ + + A K++ D+ +Y HC ++G +FG
Sbjct: 155 DKANSLIVDENDLSTRKLNNYQAQ--LHALQKEKSDRLHKVLEYVNEVHCLCGVLGIDFG 212
Query: 258 SYVNARDPSLH 290
VN PSLH
Sbjct: 213 KTVNGIHPSLH 223
>06_03_0673 +
23394027-23394094,23394267-23394539,23394613-23394958,
23395031-23395168,23395260-23395385,23395464-23395652,
23395723-23396202,23396274-23397236
Length = 860
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 272 TRPVTSSTSTWVMSPYCSLRVVRPFVCTLVPEFIVSRRTQY 394
TRPV + + WV S C L + ++ +P+ + R Y
Sbjct: 67 TRPVADAHALWVTSVACELWLAASWLIAQLPKLSPANRVTY 107
>12_01_1014 - 10309444-10309905
Length = 153
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 211 LSNSFLMKAAMSFSMLKFSRACVAQSTASCCISSLM 104
L+ +M+ +M FSR C Q T C+++L+
Sbjct: 110 LTGELFWSLSMAVAMFSFSRVCRLQRTPLHCLNTLL 145
>12_01_0504 + 3999157-4000470
Length = 437
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 147 VSHNPLHPAASPHSCQH 97
+SH LHP A+PH+ +H
Sbjct: 73 ISHVHLHPMAAPHTLKH 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,963,732
Number of Sequences: 37544
Number of extensions: 228306
Number of successful extensions: 622
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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