Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N10
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 81 1e-16
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 28 0.93
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 2.1
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 2.1
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 27 2.8
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 3.7
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo... 26 4.9
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 26 4.9
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 6.5
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 81.0 bits (191), Expect = 1e-16
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Frame = +1
Query: 271 KKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEAKIEDLSQ 450
+KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P V+K+ ++ YIV G+ +ED++
Sbjct: 25 EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83
Query: 451 QATMAAAERFKXXXXXXXXXXXXXXXXXXXP-----IAEEEDQE-GVDDTGVDEKDVEIV 612
QA A E K P I E +QE VD+TGVD KD+E+V
Sbjct: 84 QA-RAFNESQKQATETKEEAAITEESGDAQPADTAKIEESFEQEKAVDETGVDAKDIELV 142
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 28.3 bits (60), Expect = 0.93
Identities = 18/78 (23%), Positives = 31/78 (39%)
Frame = +1
Query: 79 ELTELDKATASMTEKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIVSKAKQ 258
E ++ + + K EE T+P P AGG AG + S A++
Sbjct: 35 EAERVESLISELNGKNIEELIAAGNEKLSTVPSAGAVATPAAGG----AAGAEATSAAEE 90
Query: 259 SRGEKKARKIMSKLGLKL 312
++ E+ A + +G L
Sbjct: 91 AKEEEAAEESDEDMGFGL 108
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -1
Query: 160 LNHCLRKQSLPYVSPSLMQWLYRVLLVQACLDFL*QSDNSF 38
+ LR+ S Y+ + + W+Y+ L+ AC SD+++
Sbjct: 414 IQQSLREMSATYILNNEINWIYQEALLYACCSVDAASDDTY 454
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 432 LRLSKYYVSVRVWVLEDIRIVDHKEYVL*FPYCNSVYTLYKLEAKFAHD 286
LR+S YY S ++ ++ D YVL FP+ N+ Y+ E K +D
Sbjct: 255 LRMSLYYDSNELFK----KMTDDLNYVLKFPFDNTRGNEYEKEQKIRND 299
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 2.8
Identities = 20/85 (23%), Positives = 37/85 (43%)
Frame = +1
Query: 64 NPNMPELTELDKATASMTEKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIV 243
+P P EL+ +T+ K E ++ + + E G+ +S+ IA +D
Sbjct: 231 SPQSPVKRELNDSTSP--SKLSESSSSLTGSSSALLSQSEFLGS--VPSLSDSIATVDPF 286
Query: 244 SKAKQSRGEKKARKIMSKLGLKLVQ 318
+ ++KAR ++ LKL Q
Sbjct: 287 FSFESFETDEKARSLLMDASLKLPQ 311
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 37 KRNYHF-VTKNPNMPELTELDKATASMTEKRKEETAXXXXXXXXTIPELED 186
KRN TK+ MP T+L +MT+ EE P+LED
Sbjct: 328 KRNARSQATKDACMPNYTKLKAYERNMTDASPEEKQQFRIKLLNQFPKLED 378
>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 246
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 208 PLPQVRLHLQVPGWCHLNHCLRKQSLPYV 122
P P ++ + PG C + C +++ PYV
Sbjct: 134 PFPHSKIIIVSPGICTKDICFKREQEPYV 162
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 31 FYKRNY-HFVTKNPNMPELTELDKATASMTEKRKE 132
FY++ Y H KNPN +L + A EKR++
Sbjct: 588 FYEKRYSHTHQKNPNFVKLADAMGIKALRVEKRED 622
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 25 SNFYKRNYHFVTKNPNMPELTELDK 99
+N Y+ N+HF TK M + EL K
Sbjct: 111 TNLYELNHHFGTKEEFMELIQELHK 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.130 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,066
Number of Sequences: 5004
Number of extensions: 45031
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -