Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N10
(613 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024847-3|AAF60854.1| 195|Caenorhabditis elegans Hypothetical ... 132 1e-31
AC024847-2|AAO21415.1| 197|Caenorhabditis elegans Hypothetical ... 132 3e-31
U29488-6|AAA68776.1| 161|Caenorhabditis elegans Inhibitor of ce... 33 0.21
AF016441-2|AAB65912.2| 417|Caenorhabditis elegans Hypothetical ... 30 1.5
Z70684-4|CAA94599.1| 234|Caenorhabditis elegans Hypothetical pr... 29 3.5
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 27 8.0
>AC024847-3|AAF60854.1| 195|Caenorhabditis elegans Hypothetical
protein Y65B4BR.5a protein.
Length = 195
Score = 132 bits (320), Expect = 1e-31
Identities = 74/130 (56%), Positives = 87/130 (66%), Gaps = 2/130 (1%)
Frame = +1
Query: 229 GIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDT 408
G I +AKQSR EKKARK+ SKLGLK V GV+RV IRKSKNILFVIN PDVFK+P SDT
Sbjct: 46 GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105
Query: 409 YIVFGEAKIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAEEEDQEGV--DDT 582
YI+FGEAKIEDL+Q A M+A E K EE++ E V D T
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLKPTREAPQLKT-----------VEEDENEDVEEDST 154
Query: 583 GVDEKDVEIV 612
G++EKD+E+V
Sbjct: 155 GIEEKDIELV 164
>AC024847-2|AAO21415.1| 197|Caenorhabditis elegans Hypothetical
protein Y65B4BR.5b protein.
Length = 197
Score = 132 bits (318), Expect = 3e-31
Identities = 74/129 (57%), Positives = 86/129 (66%), Gaps = 1/129 (0%)
Frame = +1
Query: 229 GIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDT 408
G I +AKQSR EKKARK+ SKLGLK V GV+RV IRKSKNILFVIN PDVFK+P SDT
Sbjct: 46 GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105
Query: 409 YIVFGEAKIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAEEEDQEGVDD-TG 585
YI+FGEAKIEDL+Q A M+A E K E ED E +D TG
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLKPTREAPQLKTVEED--------ENEDVEFKEDSTG 157
Query: 586 VDEKDVEIV 612
++EKD+E+V
Sbjct: 158 IEEKDIELV 166
>U29488-6|AAA68776.1| 161|Caenorhabditis elegans Inhibitor of cell
death protein 1 protein.
Length = 161
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = +1
Query: 205 GGISNPIAGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDV 384
GG P ++ K + +KK + + KL + + G+ V + K + NNP V
Sbjct: 23 GGKGTPRRKKKVIHKTAAA-DDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKV 81
Query: 385 FKNPHSDTYIVFGEAKIEDLSQ 450
+ ++T+ V G A + +++
Sbjct: 82 QTSVPANTFSVTGSADNKQITE 103
>AF016441-2|AAB65912.2| 417|Caenorhabditis elegans Hypothetical
protein M03F8.5 protein.
Length = 417
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 223 IAGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINN 375
I G+D S+A+ R KK ++ +LG + N+V + N+L + N
Sbjct: 205 ILGLDSTSRAQFGRNMKKTSGLLDRLGSVVFNAYNKVGDNSAVNMLPIFAN 255
>Z70684-4|CAA94599.1| 234|Caenorhabditis elegans Hypothetical
protein F28D1.4 protein.
Length = 234
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = -2
Query: 270 LATRLLCFGH--DINACDGVRNTP--CPRCACIFKFRD 169
+A + C G+ D C GVRNTP C R KF+D
Sbjct: 167 VACKFGCVGYNTDEECCRGVRNTPETCDRSTTAQKFKD 204
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 315 YKLEAKFAHDFARLLLATRLLCFGHDINACDGVRNTPCPRCACIFKFRDG 166
YK+ KF + R+L+ + +L G D+N D V N P +F R G
Sbjct: 439 YKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAG 488
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = -2
Query: 426 LSKYYVSVRV-----WVLEDIRIVDHKEYVL*FPYCNSVYTLYKL 307
L YYV R LE IR K+ ++ FP CNSV YK+
Sbjct: 232 LKNYYVECRADEKTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKI 276
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 420 WRGEDRGSVTASHYGSGREVQGTGNCC 500
++GE G +H+GS REV GT C
Sbjct: 978 YQGERCGECAQNHWGSPREVGGTCERC 1004
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.311 0.130 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,984,995
Number of Sequences: 27780
Number of extensions: 263808
Number of successful extensions: 661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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