Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N09
(442 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 152 2e-38
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 150 1e-37
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.10
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 29 0.24
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 28 0.73
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 28 0.73
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo... 27 0.97
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.3
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 26 3.0
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 26 3.0
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 3.0
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 3.9
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 25 3.9
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 5.2
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 25 5.2
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 5.2
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 25 5.2
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 5.2
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 25 5.2
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 24 9.0
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 152 bits (369), Expect = 2e-38
Identities = 67/136 (49%), Positives = 95/136 (69%), Gaps = 2/136 (1%)
Frame = +2
Query: 26 MGKIMKPGKVVLVLSGRYAGRNAIVVKNYDEGTSDKPYGHASVAGIDRYPRKVHKRMGKN 205
M KI+KPGKV L+ GR+AG+ ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 206 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 379
+I +RS++KPF+K VNYNHLMPTRY+++ K +A K+P +R R + FEE
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120
Query: 380 RYKSGKNKWFFQKLRF 427
+Y+SGK+ WFF LRF
Sbjct: 121 KYQSGKSAWFFTPLRF 136
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 150 bits (363), Expect = 1e-37
Identities = 65/136 (47%), Positives = 95/136 (69%), Gaps = 2/136 (1%)
Frame = +2
Query: 26 MGKIMKPGKVVLVLSGRYAGRNAIVVKNYDEGTSDKPYGHASVAGIDRYPRKVHKRMGKN 205
M KI+KPGKV LV GR+AG+ ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 206 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 379
+I KRS++KPF+K +NYNHLMPTRY+++ K + +P++R + + FEE
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120
Query: 380 RYKSGKNKWFFQKLRF 427
+Y++GK+ WFF LRF
Sbjct: 121 KYQTGKSAWFFTPLRF 136
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 30.7 bits (66), Expect = 0.10
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 17 PSKMGKIMKPGKVVLVLSGRYAGRNAIVVKNYDE 118
P+K+ + PG V ++L+GR+ G+ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 29.5 bits (63), Expect = 0.24
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -1
Query: 208 FIFSHPFMNLARVSVDAGDGSMSVWFVRCALVVILYDNGV 89
F+F+H + + V++ G GS S W+V L ++++ G+
Sbjct: 242 FVFTHSYQVYSMVAI--GRGSFSTWYVVSFLFSLVFEEGL 279
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 27.9 bits (59), Expect = 0.73
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 19 IQDG*DYETWKSGAGPQRPVR 81
++ G + E WKSGAG Q P++
Sbjct: 432 VRGGMEVEVWKSGAGAQLPMK 452
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.9 bits (59), Expect = 0.73
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = -1
Query: 409 EPFVLSALVSLFETDPCVETQL---LALSWVF 323
EPF ++ ++S ++ PCV T L + L+W F
Sbjct: 120 EPFQIARIISFEKSRPCVSTNLYDSVRLNWYF 151
>SPBC8D2.12c |||mitochondrial DNA binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 27.5 bits (58), Expect = 0.97
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 79 VPAAEDQHHFSRFHNLTHLGWI 14
+P +HFSRF + T GWI
Sbjct: 7 IPFTRALYHFSRFRSFTTSGWI 28
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 32 KIMKPGKVVLVLSGRYAGRNAIVVKNYD 115
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 3.0
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Frame = +2
Query: 56 VLVLSGRYAGRNAIVVKNYDEGTSDKPYGHASVAGIDRYPRKV-HKRMGKNKIHKRSKIK 232
V +++G A ++K E + K S + D YPRK+ H + + K
Sbjct: 7 VAIVTGATGLNGAAIIKRLSEDDNCKTIHCISRSLKDEYPRKIKHHSIDLLNEEPKDIAK 66
Query: 233 PF----VKGVNY 256
F VKG+NY
Sbjct: 67 KFSLEGVKGINY 78
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 3.0
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 227 IKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAKRKKLRFNTR 364
+ PF K Y H + T S S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 3.0
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 149 SVAGIDRYPRKVHKRMGKN--KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDL 322
++ +DR R + + K+ +I+ + + P ++G L+ + SFE S KD+
Sbjct: 446 NIIEVDRNSRGIEGFLKKSNDEIYMSTSVSPSIEG--RAKLLNENMRENNSFELSSEKDI 503
Query: 323 KDPAKRKK 346
K P + K+
Sbjct: 504 KSPKRLKR 511
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 3.9
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 290 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 424
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 25.4 bits (53), Expect = 3.9
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 197 GKNKIHKRSKIKPFVKGVNYNHLMPTR-YSVDFSFEKFSAKDLKDP 331
G + I R K P K VNYNH + S +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 132 LSDVPSS*FFTTMALRPAYRPLRTSTTFPG 43
L ++P + FF T+ AY P S T G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 265 NANPLFCRLQL*KIQCKGPKRPS*AQEAAFQH 360
N +P+ QL K++ P++PS A +++F H
Sbjct: 271 NISPVSPFAQLVKLEPTSPQKPSFALDSSFSH 302
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 284 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 400
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 30 VRL*NLEKWCWSSAAGTQAVTPLS*RITTRAHLTNHTDML 149
+RL L ++CWS ++ S R +LT ++++L
Sbjct: 94 LRLQRLRQYCWSGGKRMESCLDTSLSTYERDYLTRYSELL 133
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 284 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 382
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 197 GKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKF 307
G+ KIH + +++ N+ H+ TR+ F KF
Sbjct: 85 GEKKIHFNQFYQEYIRDKNHVHMNATRWHTLSEFCKF 121
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 161 IDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNY 256
ID+ +K K K K +KR IKP G Y
Sbjct: 434 IDKKKKKKKKNNKKKKKNKRKNIKPGPLGPAY 465
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,147
Number of Sequences: 5004
Number of extensions: 40359
Number of successful extensions: 130
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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