Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N09
(442 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 189 7e-49
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 189 7e-49
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 31 0.49
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 31 0.49
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 31 0.49
U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon gu... 29 1.5
U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon gu... 29 1.5
AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr pro... 29 1.5
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 29 2.0
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 2.0
Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kin... 28 3.5
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 28 3.5
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 28 3.5
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 28 3.5
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 28 3.5
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 4.6
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 4.6
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 4.6
Z81068-8|CAB02988.1| 490|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical pr... 27 6.0
U80447-7|AAB37811.1| 518|Caenorhabditis elegans Hypothetical pr... 27 8.0
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 189 bits (461), Expect = 7e-49
Identities = 88/136 (64%), Positives = 107/136 (78%), Gaps = 2/136 (1%)
Frame = +2
Query: 26 MGKIMKPGKVVLVLSGRYAGRNAIVVKNYDEGTSDKPYGHASVAGIDRYPRKVHKRMGKN 205
MGKIMKPGKVVLVL G+YAGR A+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 206 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 379
KI KR+K+KPF+K V+Y HL+PTRYSVD +F+K + + LK P+K++K + +FEE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 380 RYKSGKNKWFFQKLRF 427
RYK+GKNKWFF KLRF
Sbjct: 121 RYKTGKNKWFFTKLRF 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 189 bits (461), Expect = 7e-49
Identities = 88/136 (64%), Positives = 107/136 (78%), Gaps = 2/136 (1%)
Frame = +2
Query: 26 MGKIMKPGKVVLVLSGRYAGRNAIVVKNYDEGTSDKPYGHASVAGIDRYPRKVHKRMGKN 205
MGKIMKPGKVVLVL G+YAGR A+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 206 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 379
KI KR+K+KPF+K V+Y HL+PTRYSVD +F+K + + LK P+K++K + +FEE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 380 RYKSGKNKWFFQKLRF 427
RYK+GKNKWFF KLRF
Sbjct: 121 RYKTGKNKWFFTKLRF 136
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 30.7 bits (66), Expect = 0.49
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 146 ASVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 304
A+ AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 409 ANPAGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 30.7 bits (66), Expect = 0.49
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 146 ASVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 304
A+ AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 383 ANPAGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 30.7 bits (66), Expect = 0.49
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 146 ASVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 304
A+ AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 409 ANPAGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 456
>U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform a protein.
Length = 476
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 125 SDKPYGHASVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHL 265
SD P + A I R+ + +R+G + K PFVK +++NH+
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHI 389
>U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform b protein.
Length = 474
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 125 SDKPYGHASVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHL 265
SD P + A I R+ + +R+G + K PFVK +++NH+
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHI 389
>AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr
protein kinase protein.
Length = 469
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 125 SDKPYGHASVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHL 265
SD P + A I R+ + +R+G + K PFVK +++NH+
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHI 382
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 146 ASVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 304
A+ AG++R V + N+ KR KI + YNHL+PT +D+S K
Sbjct: 383 ANQAGVERGQNHVATHL--NRQLKRQKISKLEREKIYNHLVPT---IDYSAMK 430
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 32 KIMKPGKVVLVLSGRYAGRNAIVVK 106
K + PG V++VL+GR+ G+ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kinase
protein.
Length = 404
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 125 SDKPYGHASVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHL 265
SD P + A I R+ + +R+G + K PFVK +++NH+
Sbjct: 285 SDVPISIEAKATIKRFCCERERRLGNHGGLDEIKQCPFVKRIDWNHI 331
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/53 (20%), Positives = 21/53 (39%)
Frame = -1
Query: 172 VSVDAGDGSMSVWFVRCALVVILYDNGVTACVPAAEDQHHFSRFHNLTHLGWI 14
V+V +WF+ + G+ +PA D H + + H+ W+
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/53 (20%), Positives = 21/53 (39%)
Frame = -1
Query: 172 VSVDAGDGSMSVWFVRCALVVILYDNGVTACVPAAEDQHHFSRFHNLTHLGWI 14
V+V +WF+ + G+ +PA D H + + H+ W+
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/53 (20%), Positives = 21/53 (39%)
Frame = -1
Query: 172 VSVDAGDGSMSVWFVRCALVVILYDNGVTACVPAAEDQHHFSRFHNLTHLGWI 14
V+V +WF+ + G+ +PA D H + + H+ W+
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/53 (20%), Positives = 21/53 (39%)
Frame = -1
Query: 172 VSVDAGDGSMSVWFVRCALVVILYDNGVTACVPAAEDQHHFSRFHNLTHLGWI 14
V+V +WF+ + G+ +PA D H + + H+ W+
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 351 RSFLRLAGSFRSFALNFSKLKST 283
+SFL L G +R F LNF+++ S+
Sbjct: 1259 QSFLGLVGYYRKFILNFAQIASS 1281
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 351 RSFLRLAGSFRSFALNFSKLKST 283
+SFL L G +R F LNF+++ S+
Sbjct: 1162 QSFLGLVGYYRKFILNFAQIASS 1184
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 351 RSFLRLAGSFRSFALNFSKLKST 283
+SFL L G +R F LNF+++ S+
Sbjct: 1173 QSFLGLVGYYRKFILNFAQIASS 1195
>Z81068-8|CAB02988.1| 490|Caenorhabditis elegans Hypothetical
protein F25H5.7 protein.
Length = 490
Score = 27.1 bits (57), Expect = 6.0
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Frame = +2
Query: 14 YPSKMGKIMKPGKVVLVLS----GRYAGR--NAIVVKNYDEGTSDKPY-GHASV 154
YP K+G+++K GK + L+ AG NA+ V N ++ +S+ Y H V
Sbjct: 289 YPEKLGEVVKFGKYEITLTECKEEAIAGTIWNALTVTNTEDASSEPLYMNHVQV 342
>Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical
protein B0001.8 protein.
Length = 490
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 324 KTQLSARSCVSTQGSVSKRDTRAERTNGSSRSLG 425
KT+ S S+ S + +DTR + G SRSLG
Sbjct: 376 KTKAKTASGASSVKSFASQDTRNKSNAGDSRSLG 409
>U80447-7|AAB37811.1| 518|Caenorhabditis elegans Hypothetical
protein F55F8.7 protein.
Length = 518
Score = 26.6 bits (56), Expect = 8.0
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Frame = +2
Query: 14 YPSKMGKIMKPGKVVLVLS----GRYAGR--NAIVVKNYDEGTSDKPY-GHASV 154
YP K+G+++K GK + L+ AG N++ V N ++ TS+ Y H V
Sbjct: 290 YPEKLGEVVKFGKYEITLTECKEEAIAGTILNSLTVINTEDATSEPLYMNHVQV 343
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,825,894
Number of Sequences: 27780
Number of extensions: 228948
Number of successful extensions: 693
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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