Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N08
(356 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 33 0.013
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 29 0.16
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 29 0.21
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 0.65
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 1.1
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 26 2.0
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 2.0
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 2.0
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 2.6
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 3.5
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 25 3.5
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 4.6
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 4.6
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 4.6
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 24 6.1
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 24 6.1
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 24 8.0
SPAC23C11.12 |hcn1||anaphase-promoting complex subunit Hcn1|Schi... 24 8.0
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc... 24 8.0
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 24 8.0
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 24 8.0
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 24 8.0
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni... 24 8.0
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 8.0
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 33.1 bits (72), Expect = 0.013
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 25 SFTIDNNKNQTESKCDNDNSTNKSPKKMKQRRKSPIDNVANDVNLNTTSELVNQKNINHV 204
SFTI+ N+ +S ND++ + S M + + +N + ++T++ N K+ V
Sbjct: 330 SFTIEQNRENEKSSTKNDSTVSSSAVVMAPAGPAMAPSASNKPSASSTTKSSNSKSKKKV 389
Query: 205 TS 210
TS
Sbjct: 390 TS 391
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 29.5 bits (63), Expect = 0.16
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +1
Query: 1 GTRKKNKDSFTIDNNKNQTESKCDNDNSTNKSPKKMKQRRKSPIDNVANDVNLNTTSELV 180
G++++N+ + + T+SK ND ST +++ R +P AND ++ + V
Sbjct: 313 GSKEQNRIAKEKASGAPLTKSKSHNDTSTEYDSNSLRRSRSNPA--FANDDTVHPNTSFV 370
Query: 181 NQKNINH 201
+ NIN+
Sbjct: 371 S-SNINN 376
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 29.1 bits (62), Expect = 0.21
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 13 KNKDSFTIDNNKNQTESKCDNDNSTNKSPKKMKQRRKSPIDNV-ANDVNLNTTSELVNQK 189
K K + + NK +S N NS ++ KK+K+ + S DN +++SE +
Sbjct: 23 KRKSNVVLKKNKGAMKS---NSNSRSRGNKKLKESQFSSRDNFRTTQTQASSSSEPSDNT 79
Query: 190 NINHVTSTIDNN 225
N IDNN
Sbjct: 80 NRLVPVVIIDNN 91
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.5 bits (58), Expect = 0.65
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 10 KKNKDSFTIDNNKNQTESKCDNDNSTNKS-PKKMKQRRKSPIDNVANDVNLNTTSELVNQ 186
K+ KD+ +DN + ++ ++++ TN+S P K+++K DN NL ++S +
Sbjct: 57 KEPKDNKPLDNKNDPKKTHNEDESHTNESLPSTDKKKKK---DNDDFKQNLKSSSNKTEE 113
Query: 187 K 189
K
Sbjct: 114 K 114
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 1.1
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +1
Query: 37 DNNKNQTESKCDNDNSTNKSPKKMKQRRKSPIDNVANDVNLNTTSELVNQKNINHVTSTI 216
+NN N + S N+N++ + + Q+ S + +A+ LN++S N++N N+ +
Sbjct: 563 NNNNNNSNSGNYNNNNSGNN-NQQHQQSSSSLQGLASSF-LNSSSGNSNKQNYNNNNNQN 620
Query: 217 --DNNYQQIIQDMDSKQ 261
+NN Q + +S Q
Sbjct: 621 YGNNNNQNYNNNNNSSQ 637
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 2.0
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = +1
Query: 82 STNKSPKKMKQRRKSPIDNVANDVNLNTTSELVNQKNINHVTSTIDNNYQQIIQDMDSKQ 261
S + PKK + + N + N+ T+S L NH T ++ +DSK+
Sbjct: 276 SLSFQPKKARYESANVSFNDTSFTNVPTSSPLHQSTTANHPEKTPSRAAASLLSILDSKE 335
Query: 262 NIT 270
T
Sbjct: 336 KNT 338
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 2.0
Identities = 11/40 (27%), Positives = 16/40 (40%)
Frame = +1
Query: 10 KKNKDSFTIDNNKNQTESKCDNDNSTNKSPKKMKQRRKSP 129
+ N D D N ++ E ND S N K + + P
Sbjct: 151 ENNSDFIKFDWNSDEDEDSVSNDKSKNNESLKKSSKNEIP 190
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 2.0
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +1
Query: 91 KSPKKMKQRRKSPIDNVANDVNLNTTSELVNQKNINHVTSTIDNNYQ 231
+S +K+K ++ + I+ + + N+N +E ++ S ++ NY+
Sbjct: 355 ESLEKLKVKKSTMINEIVHRYNINEINEEGIMTEVSKYASLVNKNYE 401
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 2.6
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 37 DNNKNQTESKCDNDNSTNKSPKKMKQRRKSPIDNVANDVNLNTTSELVNQK-NINHVTST 213
+N+K QT S+ + TNK+ +K ID+ + ++ S NQK N H +ST
Sbjct: 513 NNSKVQTTSRASENADTNKTQHNIKY-----IDSYVPEYSIARQS--ANQKTNEQHPSST 565
Query: 214 IDNNYQQIIQDMDS 255
+ +QQ D+ S
Sbjct: 566 --SLHQQSTSDLKS 577
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 3.5
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 19 KDSFTIDNNKNQTESKCDNDNSTNKSPKKMKQRRKSPIDNVANDVNLNTTSELVNQKNIN 198
K+SF I++ + ++ESK ++ ++T +S + D++ DV + + E++ +
Sbjct: 32 KESFLINSVEKESESKLNSKSTTLQSSDSEDWDSEENEDDI-TDVGVPGSHEIMFPGHSK 90
Query: 199 HV-TSTIDNN 225
V T+T D N
Sbjct: 91 IVTTTTFDKN 100
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 3.5
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 10 KKNKDSFTIDNNKNQTESKCDNDNSTNKSPKKMKQRRKSP 129
K+ D + + N+ E K D STN+ + + +K P
Sbjct: 284 KEQNDKSDEEGSNNEQEEKQDKKQSTNRDLCRKESCKKEP 323
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 24.6 bits (51), Expect = 4.6
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +1
Query: 1 GTRKKNKDSFTIDNNKNQTESKCDNDNSTNKSPKKMKQRRKSPI 132
GT++ + S + K E+ C ND+ + K + + PI
Sbjct: 250 GTKEYSLKSLEMTTTKESNETLCSNDSKHRIARLKNEDNTQKPI 293
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 4.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 28 FTIDNNKNQTESKCDNDNSTNKSPKKMKQRRK 123
F +DNN N +E + + KQRRK
Sbjct: 459 FDVDNNANSSEKDETTIEKYKRKAAERKQRRK 490
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 4.6
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +1
Query: 16 NKDSFTIDNNKNQTESKCDNDNSTNKSPKKMKQRRKSPIDNVANDVNLNTTSELVN-QKN 192
+K + ++ N N +++ DN + + K+ K + A + E + Q+
Sbjct: 28 SKSTNAVEQNNNSSQASVTKDNKKKAAKRAKKKAAKKKKQSAAASASSTPVEEAQHAQEE 87
Query: 193 INHVTSTIDNNYQQIIQDMDSKQ 261
T + + Q I + D+ Q
Sbjct: 88 QQEQTILQEPGFTQTIVEKDADQ 110
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.2 bits (50), Expect = 6.1
Identities = 14/72 (19%), Positives = 36/72 (50%)
Frame = +1
Query: 10 KKNKDSFTIDNNKNQTESKCDNDNSTNKSPKKMKQRRKSPIDNVANDVNLNTTSELVNQK 189
K+N+ S + N+ + E+ N N + SP +K ++SP+ + + + + +
Sbjct: 665 KRNELSQSKLKNRKKKENSETNKNHVDMSPGFVKILKRSPLADQKKEDTQESDFKGSDDH 724
Query: 190 NINHVTSTIDNN 225
++++ S + +N
Sbjct: 725 FLSYLQSVVSSN 736
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 24.2 bits (50), Expect = 6.1
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 7 RKKNKDSFTIDNNKNQTESKCD-NDNSTNKSPKKMKQRRKS 126
+K+ +D +++ T+ + NDN T K +KQ+RKS
Sbjct: 27 KKRYEDEKRKISHQKYTDKLLEANDNETTKRKLLVKQKRKS 67
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 23.8 bits (49), Expect = 8.0
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +1
Query: 46 KNQTES-KCDNDNSTNKSPKKMKQRRKSPIDNVANDVNLNTTSELVNQKNINHVTSTIDN 222
+ + ES K +N+NS MKQ++ P D+ + N E + ++ +
Sbjct: 176 RQEPESLKKENNNSDYLPKSAMKQKKGGPKDSSKHPSNDGKIPESKPSVYKSRASNLFSS 235
Query: 223 NYQQIIQDMDSK 258
N Q I SK
Sbjct: 236 NEQSIHSSFGSK 247
>SPAC23C11.12 |hcn1||anaphase-promoting complex subunit
Hcn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 80
Score = 23.8 bits (49), Expect = 8.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 31 TIDNNKNQTESKCDNDNSTNKSPKKMKQRRKSPI 132
T+D+ E+ N+ ST SP+K K R+ I
Sbjct: 27 TLDSESTTEEALQKNEESTRLSPEKKKIIRERRI 60
>SPCC338.04 |cid2||caffeine induced death protein
Cid2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 167
Score = 23.8 bits (49), Expect = 8.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 61 SKCDNDNSTNKSPKKMKQRRKS 126
S+ D D +T+KSP K +Q+ S
Sbjct: 80 SQLDQDRNTSKSPLKSQQQLPS 101
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 130 IDNVANDVNLNTTSELVNQKNINHVTSTIDN 222
+DN+ + ++ TTS L NIN + I N
Sbjct: 38 LDNLVHHIHNGTTSNLRLISNINSILDHIGN 68
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 23.8 bits (49), Expect = 8.0
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 58 ESKCDNDNSTNKSPKKMKQRRKSPIDNVA 144
E K N + ++ P+K K ++++P D V+
Sbjct: 136 EVKMKNSSESDNQPEKKKIKKQNPTDLVS 164
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 23.8 bits (49), Expect = 8.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 124 SPIDNVANDVNLNTTSELVNQKNINHVTSTIDNNYQQI 237
S I+N+ D N NTTS +V + T +D I
Sbjct: 765 SQIENINGDENGNTTSSVV--ETFEKTTDVVDEKTTSI 800
>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 23.8 bits (49), Expect = 8.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 350 RGSFSSVLFISSACTSSICLRFLLFFLVIFC 258
+GSF+ L + T +I FL FFL FC
Sbjct: 6 QGSFTQGLIVGQLLTLAIIYVFLRFFL--FC 34
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 31 TIDNNKNQTESKCDN-DNSTNKSPKKMKQRRKSP 129
TIDNN+ + +++ DN + SP K + + +P
Sbjct: 118 TIDNNERKLDNEIDNYKHDVKYSPYKGQGKTSNP 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.300 0.119 0.313
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,148,232
Number of Sequences: 5004
Number of extensions: 17929
Number of successful extensions: 67
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)
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