Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_N07
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
 Frame = +3

Query: 168 LDGFEATKNIKV--IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDIL--KIHSRK 335
           L   E  K+ KV  I+A N+ID       +P     K+++        ++ L  +I   K
Sbjct: 235 LQSIEMAKDAKVPIIVAINKID-------KPNIDIIKVQYELAKHGIVIEELGGEIQCVK 287

Query: 336 MNLTRGINLRKIAE-LMPGASGAEVKG 413
           ++  +GINLR++ E ++  A   ++KG
Sbjct: 288 ISALKGINLRELTEAIIVQAELMDLKG 314


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 403 SAPDAPGINSAILRKLIPLVRFI 335
           SA   PG+NS    K  P ++ +
Sbjct: 68  SAGSIPGVNSTSENKTFPTIKIV 90


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 403 SAPDAPGINSAILRKLIPLVRFI 335
           SA   PG+NS    K  P ++ +
Sbjct: 68  SAGSIPGVNSTSENKTFPTIKIV 90


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 180 EATKNIKVIMATNRIDILDPA 242
           E + NIK+I    +  ILDP+
Sbjct: 229 ELSPNIKIIAVDPKGSILDPS 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,535
Number of Sequences: 438
Number of extensions: 3012
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)