Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N06
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979... 100 5e-22
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254... 96 1e-20
02_05_1008 - 33461225-33462334 29 2.6
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 28 3.5
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445... 28 4.6
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136... 28 4.6
01_06_0991 + 33634334-33634454,33634656-33634939,33636250-336367... 28 4.6
08_01_0680 - 5958066-5960253,5960707-5961503 27 8.1
>02_04_0659 -
24797477-24797533,24797614-24797726,24797814-24797943,
24798727-24798828,24798951-24798953
Length = 134
Score = 100 bits (240), Expect = 5e-22
Identities = 54/135 (40%), Positives = 77/135 (57%)
Frame = +1
Query: 37 MPFARYVEPWRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 216
MPF R+VE RVALV+ G G+LV +VD++DQ RAL+D P + R QI +L LT
Sbjct: 1 MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDI 58
Query: 217 RLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRN 396
++ + KA +A + KW S W +KL +++RA + D+DRFK+ A++KR
Sbjct: 59 KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRG 118
Query: 397 RARTAVFKSLKVKAA 441
A LK AA
Sbjct: 119 GAIRQELAKLKKTAA 133
>04_04_0506 -
25723809-25724299,25725082-25725237,25725316-25725445,
25726484-25726585,25726630-25726671
Length = 306
Score = 96.3 bits (229), Expect = 1e-20
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Frame = +1
Query: 19 GSCEDVMP-----FARYVEPWRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQ 183
GSC +++P F R+VE RVALV+ G G+LV +VD++DQ RAL+D P + R Q
Sbjct: 3 GSCREILPVVSSPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQ 60
Query: 184 IRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDR 363
I +L LT ++ + KA +A + KW S W +KL +++RA + D+DR
Sbjct: 61 INFKRLSLTDIKIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDR 120
Query: 364 FKLTSARVK 390
FK+ A++K
Sbjct: 121 FKVMLAKIK 129
>02_05_1008 - 33461225-33462334
Length = 369
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -1
Query: 185 ICCRETPLPGPSISARV*SMISTTPTNFPFRGPSETRATRHGST*RAKGMTSSQEPHTNP 6
IC ++P P P+ S S IS P R PS + +H G Q+P P
Sbjct: 307 ICYSDSPAPPPNASPEFKSFISCCLQKNPARRPSAAQLLQHRF---VAGPQQQQQPQPQP 363
>03_02_0927 -
12452262-12452428,12452538-12452607,12452689-12452830,
12452937-12453117,12454068-12454203
Length = 231
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 446 ARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICALFSLFANFCAHWLLAHF 288
A A+F K+ N ++A + D L ++ L S+ NFC+ LA+F
Sbjct: 124 AAASFRVKVNNMLMIAHDITLGKDFRLFFQVVLLLWLLSVIGNFCSSITLAYF 176
>12_01_0551 +
4446937-4447353,4449141-4450013,4451206-4451244,
4452339-4452581
Length = 523
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 269 VHAFLTTRVGAVKGYFRRNFVKWSWLRR 186
+H T+R+G + +FR V + WLRR
Sbjct: 351 LHCTSTSRLGIFEAWFRPLLVDFGWLRR 378
>04_03_0611 -
18011469-18012563,18012756-18012920,18013542-18013639,
18014541-18015498
Length = 771
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 470 ILLLPKTPARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICAL 336
IL L TP A FK+L + R L ++NL S++C +
Sbjct: 338 ILTLTDTP-NVAVAFKILMNVNMERITLAMEIATINLEVSIVCVM 381
>01_06_0991 +
33634334-33634454,33634656-33634939,33636250-33636795,
33643361-33643966
Length = 518
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 61 PWRVALVSDGPLKGKLVGVVDIIDQTRALIDGP-GSGVSRQQIRLNQLHLTKFRLKYPFT 237
PW DG G L D+ + ++ GP G V+R+ L L+ F + +PFT
Sbjct: 383 PWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLY---FDMAFPFT 439
>08_01_0680 - 5958066-5960253,5960707-5961503
Length = 994
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -1
Query: 473 GILLLPKTPARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICALFSLFANFCAHWLLA 294
G L+ + R +FT ++ L +L L SV+ LF L+A +W L
Sbjct: 930 GSLIGANSLIRHSFTCHRVSALFLLNHILAILFSKFILCISVLSLLFWLYAYLAEYWKLF 989
Query: 293 HF 288
HF
Sbjct: 990 HF 991
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,801,961
Number of Sequences: 37544
Number of extensions: 244439
Number of successful extensions: 682
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -