Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_N04
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797...    28   5.3  
08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073           27   7.1  
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978...    27   9.3  
04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31...    27   9.3  

>03_06_0128 -
           31879286-31879381,31879463-31879574,31879680-31879747,
           31880959-31881072,31881207-31881247,31881340-31881393,
           31881785-31881866,31882063-31882116
          Length = 206

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 146 VSQRNLRTXYIFFIFNYLFSAILVRFSARGIHSLERRHPVGSSFC 12
           V +R++ T ++  + NY F    +    RG H+L RR+P G   C
Sbjct: 64  VFERSINTLFLTEMINYPFEKGPLSPRFRGEHAL-RRYPTGEERC 107


>08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073
          Length = 900

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 167 GNNCACVTI*KQHRRPSTVGLETYKTEARDYNSHHVYGVRVPD 295
           G  C    I +    P  V  + Y+++AR YN  +VYG RV D
Sbjct: 414 GEGCFNELINRNMIMPVEVQYQGYQSKAR-YNEGYVYGCRVHD 455


>12_01_0971 -
           9781887-9781924,9782036-9782247,9782327-9784114,
           9784630-9785432
          Length = 946

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
 Frame = -1

Query: 317 FNEGFLCRPEREHHTHG---DCYSLSLPFYMFRDQLSMVADVVSRWSHRHN 174
           FN    C P  E  +H     C SL L        LS+  D   +W   HN
Sbjct: 340 FNSESCCPPHLEDISHAIISKCRSLPLAIISIASLLSIKPDTEDQWMQVHN 390


>04_01_0021 +
           311914-312399,314218-314310,314391-314672,314754-314826,
           315273-315405,315476-315629,315763-315843,316174-316296,
           316629-316787,316862-316996,317159-317254,317416-317910,
           318651-318722,319496-319537
          Length = 807

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +2

Query: 389 ITEWMYNPKA---LDEGPDSHTWKYLREVRKPSNSGFHLDSSRISHNNG 526
           +TE++ +P+    + EG  S T K    +    NSG +LDSS   ++NG
Sbjct: 614 LTEYLGSPQQDIPVSEGAVSGTVKDEEVIDSSKNSGENLDSSMQKNDNG 662


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,776,177
Number of Sequences: 37544
Number of extensions: 277578
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)