Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_N02
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56...    36   0.014
02_05_0934 - 32851709-32853398,32854458-32854738                       35   0.024
03_02_0151 + 5947177-5947322,5947461-5947607,5947707-5947931,594...    33   0.075
05_06_0139 + 25952523-25952610,25952736-25953288,25953417-259539...    27   4.9  

>05_01_0084 +
           562119-562411,562854-562902,563151-563162,563194-563327,
           563716-566278
          Length = 1016

 Score = 35.5 bits (78), Expect = 0.014
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = +2

Query: 11  GDQRVTAFNEVAEAMLGKSAEEIG--RMFDYDKNAYGQVFDDVXXXXXXXXXXXXIETYS 184
           G    +AF+E  E + G+ A E+   R  D D   + ++ + V             ETY+
Sbjct: 726 GSTYASAFDEAGEQIFGRKAGELFSIRNVDQDDAQFAEIIEGVRWHLYLFKLKVKEETYN 785

Query: 185 DEARLKTVIMNAQPVDYKDGNAKLLKSIKEI 277
           DE  LK   +  + +D    +  LL +I  +
Sbjct: 786 DEQSLKCTAVKVEKLDPSKESNVLLGAIDNL 816


>02_05_0934 - 32851709-32853398,32854458-32854738
          Length = 656

 Score = 34.7 bits (76), Expect = 0.024
 Identities = 21/84 (25%), Positives = 36/84 (42%)
 Frame = +2

Query: 8   AGDQRVTAFNEVAEAMLGKSAEEIGRMFDYDKNAYGQVFDDVXXXXXXXXXXXXIETYSD 187
           +G   VTAF E  + +LG SA E+  + + +   +     +              E+Y D
Sbjct: 563 SGTAWVTAFQEAGQELLGCSATELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESYGD 622

Query: 188 EARLKTVIMNAQPVDYKDGNAKLL 259
           E ++K   +  + VD   G +K L
Sbjct: 623 ERKVKNTAVKVEKVD-PSGESKFL 645


>03_02_0151 +
           5947177-5947322,5947461-5947607,5947707-5947931,
           5948036-5948213,5948328-5948595,5948684-5948786,
           5948882-5949006,5949091-5949169,5949250-5949394,
           5949500-5949660,5949750-5949870,5950081-5950275
          Length = 630

 Score = 33.1 bits (72), Expect = 0.075
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +2

Query: 11  GDQRVTAFNEVAEAMLGKSAEEIGRMFDYD-KNAYGQVFDDVXXXXXXXXXXXXIETYSD 187
           G+  ++ FN+ AE ++G SA+E+ R+   +  ++Y     +                Y +
Sbjct: 538 GEAWLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMN 597

Query: 188 EARLKTVIMNAQPVDYKDGNAKLLKSIKEITG 283
           E R +  + +  PVD+      +L+ I ++TG
Sbjct: 598 EKRQRITVRSEAPVDHAAEAKYMLEEIAKLTG 629


>05_06_0139 +
           25952523-25952610,25952736-25953288,25953417-25953913,
           25953942-25953955
          Length = 383

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 105 FLS*SNMRPISSALLPNIASATSLNAVTRWS 13
           F+S  ++RP+ S L P +     L+   RW+
Sbjct: 173 FISGLDLRPLKSTLYPQVTETQGLSLFGRWN 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,258,763
Number of Sequences: 37544
Number of extensions: 108885
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)