Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_N01
         (493 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051896-1|AAK93320.1| 1420|Drosophila melanogaster LD38533p pro...    28   6.0  
AF241366-1|AAF98388.1|  813|Drosophila melanogaster cleavage and...    28   6.0  
AE013599-1901|AAF58240.1| 1455|Drosophila melanogaster CG10110-P...    28   6.0  
AE013599-1900|AAM68553.1| 1420|Drosophila melanogaster CG10110-P...    28   6.0  

>AY051896-1|AAK93320.1| 1420|Drosophila melanogaster LD38533p protein.
          Length = 1420

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 199  NTNLTRGFFVI*K*YKIKRNK*TEHKSYDEQLP*NKL-LDCY-RQYLYHR 56
            N N+  GF      Y++K +    + SYD   P  K+ L C  RQ +YHR
Sbjct: 958  NVNIPNGFLYFDTTYELKISVLPSYLSYDSVWPVRKVPLRCTPRQLVYHR 1007


>AF241366-1|AAF98388.1|  813|Drosophila melanogaster cleavage and
           polyadenylation specificityfactor protein.
          Length = 813

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 199 NTNLTRGFFVI*K*YKIKRNK*TEHKSYDEQLP*NKL-LDCY-RQYLYHR 56
           N N+  GF      Y++K +    + SYD   P  K+ L C  RQ +YHR
Sbjct: 351 NVNIPNGFLYFDTTYELKISVLPSYLSYDSVWPVRKVPLRCTPRQLVYHR 400


>AE013599-1901|AAF58240.1| 1455|Drosophila melanogaster CG10110-PA,
            isoform A protein.
          Length = 1455

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 199  NTNLTRGFFVI*K*YKIKRNK*TEHKSYDEQLP*NKL-LDCY-RQYLYHR 56
            N N+  GF      Y++K +    + SYD   P  K+ L C  RQ +YHR
Sbjct: 993  NVNIPNGFLYFDTTYELKISVLPSYLSYDSVWPVRKVPLRCTPRQLVYHR 1042


>AE013599-1900|AAM68553.1| 1420|Drosophila melanogaster CG10110-PB,
            isoform B protein.
          Length = 1420

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 199  NTNLTRGFFVI*K*YKIKRNK*TEHKSYDEQLP*NKL-LDCY-RQYLYHR 56
            N N+  GF      Y++K +    + SYD   P  K+ L C  RQ +YHR
Sbjct: 958  NVNIPNGFLYFDTTYELKISVLPSYLSYDSVWPVRKVPLRCTPRQLVYHR 1007


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,970,532
Number of Sequences: 53049
Number of extensions: 229684
Number of successful extensions: 336
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1721789184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)