Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_N01
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82073-2|CAB04925.1|  358|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine re...    27   5.6  
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    27   7.4  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    27   7.4  

>Z82073-2|CAB04925.1|  358|Caenorhabditis elegans Hypothetical
           protein W06D12.4 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 123 LCSVYLFLFILYYFQITKKPLVRFV-FSIYLYFI*SLIYTSLEFSTIRYCTIS 278
           L  ++   FI  Y+ ITK   +RF  F  ++ +I    Y  +E+S I +   S
Sbjct: 106 LAVIFAVHFIFRYWTITKNDKIRFFNFPYFICWIIGSYYFGVEYSYILHVEFS 158


>AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 60 protein.
          Length = 289

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +3

Query: 123 LCSVYLFLFILYYFQITKKPLVRFVFSIYLYFI*SLIYTSLEFSTIRYCTI 275
           L + Y+FL I  + +I KKP    +F IY  F   + Y +L+ S + Y T+
Sbjct: 22  LLNFYIFLAIFIFKKIPKKP---EMFLIYARFAIDICY-ALDSSNLGYFTL 68


>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform a protein.
          Length = 1212

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 257  NTLLYNIYSNMVAF*LFFYFQKYS 328
            NT LY +Y N  A  + FY+Q Y+
Sbjct: 993  NTFLYFLYKNANAVFIIFYYQFYN 1016


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform b protein.
          Length = 1454

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 257  NTLLYNIYSNMVAF*LFFYFQKYS 328
            NT LY +Y N  A  + FY+Q Y+
Sbjct: 993  NTFLYFLYKNANAVFIIFYYQFYN 1016


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,455,950
Number of Sequences: 27780
Number of extensions: 143910
Number of successful extensions: 311
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)