Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_M24
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 239 2e-64
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 68 1e-12
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce... 29 0.44
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 1.3
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 27 1.8
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 27 2.3
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 27 2.3
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|... 25 5.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 5.4
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 25 5.4
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 25 7.2
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 25 7.2
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 25 9.5
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.5
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 239 bits (585), Expect = 2e-64
Identities = 109/176 (61%), Positives = 140/176 (79%), Gaps = 5/176 (2%)
Frame = +1
Query: 22 VVAIGFEGSANKLGIGIVR-----DGEILANCRRTYITPPGLGFLPRETAEHHQRNIHDL 186
++A+G EGSANKLG+GI+ +ILAN R TYITPPG GFLP +TA+HH+ I L
Sbjct: 5 LIALGLEGSANKLGVGIILHDTNGSAKILANVRHTYITPPGQGFLPSDTAKHHRAWIIPL 64
Query: 187 LKQAFEDSGLTPKDIDVVCYTKGPGMGAPLMVCAIVARTCAKLWNKPILGVNHCIGHIEM 366
+KQAF ++ ++ KDID +C+TKGPG+GAPL A+ AR + + KP++ VNHCIGHIEM
Sbjct: 65 IKQAFAEAKISFKDIDCICFTKGPGIGAPLNSVALCARMLSLIHKKPLVAVNHCIGHIEM 124
Query: 367 GRLITKAENPIVLYVSGGNTQIIAYSRKRYRIFGETIDMAVGNCLDRFARVFKMSN 534
GR IT A+NP+VLYVSGGNTQ+IAYS K+YRIFGET+D+A+GNCLDRFAR+ +SN
Sbjct: 125 GREITGAQNPVVLYVSGGNTQVIAYSEKKYRIFGETLDIAIGNCLDRFARIIGLSN 180
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 67.7 bits (158), Expect = 1e-12
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 15/180 (8%)
Frame = +1
Query: 22 VVAIGFEGSANKLGIGIVRDGEILANCRRTYI---TPPGL-------GFLPRETAEHHQR 171
+ A+ E S + + +VR + ++C+ I T + G P HQ+
Sbjct: 39 LTALAIETSCDDTSVSVVRTSDSSSHCQNEIICLNTHRTISKYEAYGGIHPTIVIHEHQK 98
Query: 172 NIHDLLKQAFED---SGLTPKDIDVVCYTKGPGMGAPLMVCAIVARTCAKLWNKPILGVN 342
N+ ++++ D SG+T D D++ T+GPGM PL V A+ A KP+L V+
Sbjct: 99 NLAKVIQRTISDAARSGIT--DFDLIAVTRGPGMIGPLAVGLNTAKGLAVGLQKPLLAVH 156
Query: 343 HCIGHIEMGRLITKAENPIV-LYVSGGNTQII-AYSRKRYRIFGETIDMAVGNCLDRFAR 516
H H +L + P + + VSGG+T ++ + S + I T D+AVG+ LD+ A+
Sbjct: 157 HMQAHALAVQLEKSIDFPYLNILVSGGHTMLVYSNSLLNHEIIVTTSDIAVGDYLDKCAK 216
>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 29.1 bits (62), Expect = 0.44
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 422 IHKLLLTPEKDIGSLEKP 475
IHKLLL+ EKD+G ++P
Sbjct: 242 IHKLLLSSEKDVGHTDEP 259
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 238 PHQYPLGLIRSLQKLVSTNHEYFSGD-VQLFPEV 140
PH Y + L +SL KL H Y D V++ P+V
Sbjct: 854 PHGYIIDLSKSLIKLYKVLHRYSQRDCVEVIPDV 887
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 227 ILMW-SATLKVLAWVHLSWFVLLLPELVLNYGTNPFWVST 343
IL W + T + W HLS F++ L Y ++ WVS+
Sbjct: 201 ILSWHNETFNI--WTHLSAFIVFFAVLAYFYPSSSSWVSS 238
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -1
Query: 122 GVMYVLLQFASISPSLTMPIPSLLALPSKPIATTIIFDPR 3
G ++ + ++ SPS+ MP ++ PS PI ++I F+ R
Sbjct: 425 GDLFSKINISTESPSVAMPSIPVIQPPSFPIFSSIDFNVR 464
>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 26.6 bits (56), Expect = 2.3
Identities = 23/89 (25%), Positives = 36/89 (40%)
Frame = +1
Query: 232 DVVCYTKGPGMGAPLMVCAIVARTCAKLWNKPILGVNHCIGHIEMGRLITKAENPIVLYV 411
D + T GPG L R +N PI+G+ C+GH ++
Sbjct: 265 DGIFLTNGPGDPTHLTKTVNNLRELMNTYNGPIMGI--CMGH------------QLLALS 310
Query: 412 SGGNTQIIAYSRKRYRIFGETIDMAVGNC 498
+G T + Y + + I +D+A GNC
Sbjct: 311 TGAKTIKLKYGNRGHNI--PALDIASGNC 337
>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 89 ISPSLTMPIPSLLALPSKPIATTIIFDPR 3
+ P +T+P+PSLL+ ++ + T+ F+ R
Sbjct: 249 LPPCVTLPVPSLLSF-ARSVLLTVSFEIR 276
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 227 ILMWSATLKVLAWVHL--SWFVLLL-PELVLNYGTNPFWVSTIALVILKWA 370
I++W+ L VLAW+ SW + + L FW ++ + L WA
Sbjct: 2243 IVLWALLLGVLAWISRTHSWIICVFGVGLGAPRWLQQFWATSNIGLYLPWA 2293
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 493 YPQPYLWFLQRSYIFFWSKQ 434
Y PY+ L YI+ W+K+
Sbjct: 251 YNSPYIITLHNQYIYIWNKE 270
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -2
Query: 499 NNYPQPYLWFLQRSYIFFWSKQ 434
+NY +PY + R Y + W +Q
Sbjct: 65 DNYKRPYAVWKDRGYAYSWGQQ 86
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -2
Query: 235 HQYPLGLIRSLQKLVSTNHEYFSGDVQLFPEVKSLVRVE*CMFSCNLQVFL 83
+QY LG IR++Q +T HE+ ++ P V+ ++ ++ V L
Sbjct: 250 YQYYLGRIRAIQLDYTTAHEHLVSAIRKAPNTVYAVQFLEAVYKLHIVVQL 300
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Frame = +2
Query: 248 LKVLAWV-----HLSWFVLL---LPELVLNYGTNPFWVSTIALVILKW 367
L +LAW+ ++S F+L ++VL +G W S + IL W
Sbjct: 320 LNLLAWILKLYSYMSLFILFGSNYSDIVLLFGAGSKWASPDSSSILSW 367
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 91 VFLHLLQCQYQAY*RFLR 38
VFLHLL C+ ++ +FL+
Sbjct: 269 VFLHLLPCERTSFKKFLK 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,590
Number of Sequences: 5004
Number of extensions: 57699
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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