Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_M24
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0025 - 5710833-5711234,5711373-5711528,5714615-5715382 252 1e-67
12_02_0360 - 17966857-17966865,17966866-17966954,17967276-179673... 70 1e-12
01_02_0069 - 10813467-10813475,10813476-10813564,10813865-108139... 40 0.002
07_03_0958 + 22881718-22881999,22882114-22883880 30 1.0
05_03_0317 - 12249228-12249275,12263876-12264518,12264954-122666... 29 1.8
01_06_0875 - 32650150-32650350,32650464-32650788,32650872-326510... 28 4.1
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 28 5.5
04_04_1031 - 30254665-30255794,30256181-30257036 28 5.5
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 27 7.2
03_01_0019 + 167900-168343,168567-168751,169076-169430 27 7.2
01_05_0188 + 19055421-19056857 27 7.2
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575... 27 9.6
09_01_0173 + 2495864-2496312,2497420-2497457,2497915-2498123,249... 27 9.6
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114... 27 9.6
>05_02_0025 - 5710833-5711234,5711373-5711528,5714615-5715382
Length = 441
Score = 252 bits (618), Expect = 1e-67
Identities = 113/172 (65%), Positives = 138/172 (80%), Gaps = 1/172 (0%)
Frame = +1
Query: 25 VAIGFEGSANKLGIGIVR-DGEILANCRRTYITPPGLGFLPRETAEHHQRNIHDLLKQAF 201
+A+G E SANK+GIG+V GEIL+N R TY+TPPG GFLPRETA HH ++ LL+ A
Sbjct: 76 LALGLESSANKIGIGVVSLSGEILSNPRHTYVTPPGHGFLPRETAHHHLAHLLPLLRAAL 135
Query: 202 EDSGLTPKDIDVVCYTKGPGMGAPLMVCAIVARTCAKLWNKPILGVNHCIGHIEMGRLIT 381
++G+TP D+ VCYTKGPGMGAPL V A AR + LW KP++GVNHC+ H+EMGR +T
Sbjct: 136 GEAGVTPADLACVCYTKGPGMGAPLQVAAAAARALSLLWGKPLVGVNHCVAHVEMGRAVT 195
Query: 382 KAENPIVLYVSGGNTQIIAYSRKRYRIFGETIDMAVGNCLDRFARVFKMSND 537
A +P+VLYVSGGNTQ+IAYS RYRIFGETID+AVGNCLDRFARV ++SND
Sbjct: 196 GAVDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLELSND 247
>12_02_0360 -
17966857-17966865,17966866-17966954,17967276-17967399,
17967639-17967717,17968267-17968352,17968471-17968661,
17970496-17970560,17971192-17971282,17971705-17971801,
17971883-17972128,17972248-17972505
Length = 444
Score = 69.7 bits (163), Expect = 1e-12
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Frame = +1
Query: 133 GFLPRETAEHHQRNIHDLLKQAFEDSGLTPKDIDVVCYTKGPGMGAPLMVCAIVARTCAK 312
G P+ E H I ++++A +D+ ++ D+ V T GPG+ L V AR AK
Sbjct: 152 GVAPKMAEEAHSLAIDQVVQKALDDANVSENDLSAVAVTVGPGLSLCLRVGVHKARKIAK 211
Query: 313 LWNKPILGVNHCIGHIEMG-----RLITK-AENP-IVLYVSGG-NTQIIAYSRKRYRIFG 468
+ PI+GV+H H + RL+ K + P + L +SGG N ++A+ +Y G
Sbjct: 212 SFRLPIVGVHHMEAHALVSSSIDVRLVNKDLDFPFLALLISGGHNLLVLAHGLGQYVQLG 271
Query: 469 ETIDMAVGNCLDRFAR 516
TID A+G D+ AR
Sbjct: 272 TTIDDAIGEAYDKSAR 287
>01_02_0069 -
10813467-10813475,10813476-10813564,10813865-10813988,
10814227-10814305,10815298-10815388,10815808-10815904,
10816197-10816241,10816369-10816464
Length = 209
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +1
Query: 184 LLKQAFEDSGLTPKDIDVVCYTKGPGMGAPLMVCAIVARTCAKLWNKPILGVNH 345
++++A +++ ++ D+ V T GPG+ L V AR AK ++ PI+GV+H
Sbjct: 48 VVQKALDNANVSESDLSAVAVTVGPGLSLCLRVGVHKARKIAKSFHLPIVGVHH 101
>07_03_0958 + 22881718-22881999,22882114-22883880
Length = 682
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -1
Query: 170 LW*CSAVSRGKKPSPGGVMYVLLQFASISPSL--TMPIPSLLALPS 39
LW C+ RG +PS + LQF + P+L TMP+P+ +LPS
Sbjct: 581 LW-CAHPDRGVRPSIKQAL-AALQFEAPLPALPPTMPVPTYSSLPS 624
>05_03_0317 -
12249228-12249275,12263876-12264518,12264954-12266682,
12283603-12283975,12284119-12284715
Length = 1129
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/83 (22%), Positives = 36/83 (43%)
Frame = +1
Query: 142 PRETAEHHQRNIHDLLKQAFEDSGLTPKDIDVVCYTKGPGMGAPLMVCAIVARTCAKLWN 321
P ET E QR +H+LL + + L+P + V+ K G + C + + +
Sbjct: 395 PEETKEI-QRQVHELLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIR-YR 452
Query: 322 KPILGVNHCIGHIEMGRLITKAE 390
PI +N + + + +K +
Sbjct: 453 HPIPRLNDMLDELSGSIVFSKVD 475
>01_06_0875 -
32650150-32650350,32650464-32650788,32650872-32651092,
32651187-32651243,32651333-32651515
Length = 328
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 265 GAPLMVCAIVARTCAKLWNKPILGVNHCIGHIEMGRLIT---KAENPIVLYVSGGNTQI 432
G P+ CA VA CA++ +GVN + G +++ P+V+Y + G T +
Sbjct: 200 GDPITECAAVADACARV---GAVGVNCTAPRLVHGLILSIRKVTSKPVVVYPNSGETYV 255
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 368 PISI*PMQWLTPKMGLFHSLAQVLATIAQ 282
P+S P W TP GL HS + L + +
Sbjct: 425 PVSSSPQMWPTPDQGLLHSSSSQLRIVRE 453
>04_04_1031 - 30254665-30255794,30256181-30257036
Length = 661
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -1
Query: 227 SFGVNPESSKACFNKS*IFLW*CSAVSRGKKPSPGGVMYVLLQFASISPSLTMP 66
S G + + C KS I CS V+ + P P G+ + L+F +I+ L+ P
Sbjct: 134 SSGYSGGCASFCSTKSNIIDGMCSGVACCQAPVPKGLKKLELEFTNITGQLSRP 187
>04_04_1157 -
31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -2
Query: 409 HIAQLDFQ--LSLSICPFQYDQCNG*HPKW 326
++A LDF SLS+ F Y+Q +G P W
Sbjct: 277 NLASLDFSKFASLSLLDFSYNQLSGNFPPW 306
>03_01_0019 + 167900-168343,168567-168751,169076-169430
Length = 327
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 161 CSAVSRGKKPSPGGVMYVLLQFASIS--PSLTMPIPSLLALPSKPI 30
CSA KP+PGG+ +S S PS+ P+ P+ PI
Sbjct: 28 CSAKHHKPKPTPGGISGNASSSSSNSSTPSIPPPVAPTPTAPTPPI 73
>01_05_0188 + 19055421-19056857
Length = 478
Score = 27.5 bits (58), Expect = 7.2
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 5/135 (3%)
Frame = +1
Query: 145 RETAEHHQRNIHDLLKQAFEDSGLTPKDIDVVCYTKGPGMGAPLMVCAIVAR--TCAKLW 318
R + + + I + F S LTP DIDV+ P+ +V R A++
Sbjct: 138 RASRDESELVIFSAVDDVFARSALTPADIDVLIVNCSIFTPTPVFADMVVNRYKLRAEVQ 197
Query: 319 NKPILGVNHCIGHIEMGRLITKAENPIVLYVSGGNTQIIAYS--RKRYRIFGETIDMAVG 492
N + G+ G + +G A+N + + G N I++ +Y + G M +
Sbjct: 198 NVNLSGMGCSAGLVSVG----LAKNLLQVSPPGTNVLIVSTEILSSQYYV-GTERAMLLP 252
Query: 493 NCLDRF-ARVFKMSN 534
NCL R A +SN
Sbjct: 253 NCLFRMGAAAMILSN 267
>12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,
5751816-5751993
Length = 1572
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 376 ITKAENPIVLYVSGGNTQIIAYSRKRYRIFGETIDM 483
+TK + + YVSGG + + SR RI TID+
Sbjct: 1367 LTKFGSSVNPYVSGGEEEHLVDSRSSLRISSLTIDL 1402
>09_01_0173 +
2495864-2496312,2497420-2497457,2497915-2498123,
2498894-2499205
Length = 335
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 341 LTPKMGLFHSLAQVLATIAQTMRGAP 264
LTP G+F S+ +++A+T+ G P
Sbjct: 264 LTPLKGIFSSIENAASSVARTISGQP 289
>07_01_0162 +
1138420-1138640,1138788-1138830,1139449-1140971,
1141770-1142063,1142145-1142337,1142624-1142694,
1142781-1144200
Length = 1254
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 258 WHGCTSHGLCYCC-QNLC*TMEQTHFGCQPLHW 353
W C HG+ Y C +N+ M GC+P HW
Sbjct: 527 WRSC--HGVAYLCMENVVTEMA----GCRPTHW 553
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,600,249
Number of Sequences: 37544
Number of extensions: 375257
Number of successful extensions: 889
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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