Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M24
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    23   2.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.1  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 25  VAIGFEGSANKLGIGIVRDGEI 90
           +A+GF G A    IGIV D  +
Sbjct: 98  LAVGFSGLAAGFAIGIVGDAGV 119


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 238 PHQYPLGLIRSLQKLVSTNHEYFSGDVQLFPEVKSLVRVE*CMFSCNLQVFLHLLQ 71
           P +  LG + SL  L + N +      Q  P V  +  ++  M SC++ VFL L++
Sbjct: 243 PARVTLG-VTSLLTLATQNTQ----SQQSLPPVSYVKAIDVWMSSCSVFVFLSLME 293


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 209 PD*PQRILMWSATLKVLAWVHLSWFVLLLPELVLNY 316
           P  P R+L W+   + L  +   W V   P   L+Y
Sbjct: 14  PAGPPRLLGWNVPAEELIHIPEHWLVYPEPNPSLHY 49


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 493 YPQPYLWFLQRSYIFFWSKQ*FVYCHH*HIAQLDFQLSLSICPFQYDQ 350
           YP      LQ+  I  +++Q F Y H     Q   QL+LS     Y +
Sbjct: 442 YPSTSSHILQQPSIRTYTQQQFPYVHDTLQIQPQEQLTLSKVTSNYHE 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,712
Number of Sequences: 438
Number of extensions: 4265
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)