Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M20
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 273 FQRDVNLYQNNDSIHNW 323
           F+R VN Y NN  I  +
Sbjct: 302 FKRKVNFYPNNQDIEKF 318


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 270 PFQRDVNLYQNNDSIHNWQ 326
           P  RD+ +YQ++  +H+ Q
Sbjct: 62  PEHRDLPIYQSHHHLHHHQ 80


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = -2

Query: 318  YECCRCFGISSHPFEMDSISVSI 250
            Y+C  C+  +   F + S++V +
Sbjct: 1066 YDCYVCYSPNDEDFVLHSLAVEL 1088


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,388
Number of Sequences: 438
Number of extensions: 1377
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)