Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_M19
(419 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 31 0.073
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 31 0.096
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 26 2.7
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 2.7
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 3.6
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p... 25 4.8
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 6.3
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 25 6.3
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 6.3
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 24 8.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 24 8.4
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 31.1 bits (67), Expect = 0.073
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +2
Query: 50 WNALGS*TTSNSPSL*RPKKS*VSS--VRNRLKSSMGLGNSSRTSSTTLARP---SKPTR 214
+N + S TS SPS + S VSS V RL+ S+ SR+ S +L P S TR
Sbjct: 285 FNVISSYETSASPSTVIDQSSQVSSIFVNKRLRKSVNNQAISRSDSLSLDTPKIDSLFTR 344
Query: 215 ASFKSILMCNTSLQRRS 265
AS K + + RRS
Sbjct: 345 ASIKPLKPSQSPNSRRS 361
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 30.7 bits (66), Expect = 0.096
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 67 LNNKQFALALTPEEVLSLVSPQPSKKFYG-PW 159
LN +F + L ++++ + P+P K F+G PW
Sbjct: 267 LNRSKFDVVLVEDDLIYMKGPRPKKSFFGLPW 298
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.8 bits (54), Expect = 2.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 312 FMISLNDDKSVNGFHGDLLWSEVLHIKIDLKLALVGFDGRAR 187
F+ + + S N FHG L W L +K++L L L G AR
Sbjct: 87 FLSTKSTSASENKFHGGLNW---LSLKLNLLLRLQGRMNSAR 125
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 287 LSSLRLIMKRRWMSTDGCLESFQGDTSCLKVVMSTLSS 400
LSS + ++K W D + TSC+ ++S+L S
Sbjct: 554 LSSCKNLLKVLWDCLDDVKDDLSSSTSCVMDLLSSLCS 591
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 34 PYLLEMERPRLLNNKQFALALTPEEVLSLVSPQPSKKFYG 153
P + P+L TP +VL +SP+ + KF G
Sbjct: 455 PSTVPKMNPKLQGGNSVTAPSTPSKVLPAMSPKVAPKFQG 494
>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.0 bits (52), Expect = 4.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 100 PEEVLSLVSPQPSKKFY 150
P+ ++SL +P+P KFY
Sbjct: 183 PDTLISLTAPKPCSKFY 199
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 24.6 bits (51), Expect = 6.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 398 WTASTSQPSGNWYLLENFRDTHPCSSIFSS 309
W + + SG Y NF D H CS + SS
Sbjct: 1039 WVYAIAAASGPLYFTLNFEDEH-CSGLGSS 1067
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 6.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 133 PSKKFYGPWKQLSNLLHDS 189
PSK+ +GPW +S L D+
Sbjct: 51 PSKRLWGPWNFISFWLADA 69
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 24.6 bits (51), Expect = 6.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +1
Query: 73 NKQFALALTPEEVLSLV---SPQPSKKFYGP 156
NK+F LAL P+E+ LV + +PS K P
Sbjct: 178 NKKFGLALAPDEIDYLVECYTSEPSLKSREP 208
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 204 FDGRARVVEEVRELFPRPIELFRRLRTDET*D 109
FDG + +LFP ++ F T+E D
Sbjct: 176 FDGATLTIFLAEDLFPNAVKYFTEAMTEEASD 207
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 24.2 bits (50), Expect = 8.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 368 NWYLLENFRDTHPCSS 321
+WYLLE R HP S+
Sbjct: 261 DWYLLEKSRVIHPSSN 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.132 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,451
Number of Sequences: 5004
Number of extensions: 32665
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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