Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_M17
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0212 - 1605544-1605647,1605799-1605842,1606189-1606230,160... 30 1.3
10_01_0013 + 154098-154101,154513-154673,154773-154847,155071-15... 29 3.0
09_02_0196 - 5678744-5679222,5679304-5679937 28 3.9
11_04_0299 + 16127671-16128180,16128217-16128516 28 5.2
02_02_0483 - 10830978-10831284,10831727-10832232,10832770-10832856 27 6.8
12_02_0541 + 20162313-20162374,20162670-20163419,20164627-201648... 27 9.0
11_03_0191 - 11366831-11367676 27 9.0
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083... 27 9.0
01_06_0143 - 26916490-26917719 27 9.0
01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266 27 9.0
01_05_0169 + 18874799-18875057,18875103-18875338 27 9.0
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 27 9.0
>12_01_0212 -
1605544-1605647,1605799-1605842,1606189-1606230,
1606306-1606394,1606477-1606521,1606801-1606845,
1606874-1606981,1607065-1607150,1607553-1607640,
1608185-1608385,1608790-1608865,1608951-1609000,
1609082-1609144,1609225-1609278,1609395-1609497,
1610010-1610050,1610654-1610685,1612086-1612224
Length = 469
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 347 QEIIQITSYSE*LHCC-ECPKWI*YNTLYLGNFVYWL 454
Q +I++ Y HC C W+ +NTL+ +F YW+
Sbjct: 53 QIVIKLYQYH---HCSPSCTSWVIFNTLFGLSFTYWM 86
>10_01_0013 +
154098-154101,154513-154673,154773-154847,155071-155571,
155873-156214,158107-158234,158296-158342,160117-160196,
160569-160654,161409-161556,161947-162082,162160-162488,
162953-163169,164547-164572
Length = 759
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 6 RKSSIEMQFFFLQNVMYVHFMQFFLKCFCIEGHNLLILTSYNT-YCD 143
R SSI +F F + ++ + FCI+ HN L Y T YCD
Sbjct: 370 RVSSILKEFGFCPKEKCIDNIKLYCS-FCIQNHNFLSPYMYGTSYCD 415
>09_02_0196 - 5678744-5679222,5679304-5679937
Length = 370
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 20 RDAIFFFTKCYVCTFHAILSEV 85
RD FF T+ Y FHA+L EV
Sbjct: 214 RDRYFFLTRPYPPAFHALLGEV 235
>11_04_0299 + 16127671-16128180,16128217-16128516
Length = 269
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 20 RDAIFFFTKCYVCTFHAILSEV 85
RD FF T Y FHA+L EV
Sbjct: 125 RDRYFFLTPSYPPAFHALLGEV 146
>02_02_0483 - 10830978-10831284,10831727-10832232,10832770-10832856
Length = 299
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 20 RDAIFFFTKCYVCTFHAILSE 82
RD FF T Y TFHA+L E
Sbjct: 62 RDRYFFLTPPYPPTFHALLGE 82
>12_02_0541 +
20162313-20162374,20162670-20163419,20164627-20164820,
20165001-20165074,20165094-20165114
Length = 366
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 20 RDAIFFFTKCYVCTFHAILSEV 85
RD FF T Y FHA+L EV
Sbjct: 135 RDRYFFLTPPYPPAFHALLGEV 156
>11_03_0191 - 11366831-11367676
Length = 281
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 20 RDAIFFFTKCYVCTFHAILSEV 85
RD FF T Y FHA+L EV
Sbjct: 125 RDRYFFLTPPYPPAFHALLGEV 146
>07_03_1584 +
27907345-27907357,27907693-27908039,27908202-27908319,
27908653-27908705,27908808-27908978,27909447-27909643,
27909729-27909807,27909954-27909992,27910202-27910321,
27910417-27910518,27910654-27910737,27910832-27911074,
27911156-27911281,27911365-27911439,27911534-27911605,
27911807-27911926,27912075-27912172,27912643-27912802,
27912867-27912980,27913029-27913121,27913122-27913319,
27913404-27913497,27914032-27914192
Length = 958
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 168 LWLLMFNFVAKHRRVPVVSIHSCSVL 245
L+ LMFNFV+ +V S H CS L
Sbjct: 795 LFSLMFNFVSYFFQVCAPSCHDCSTL 820
>01_06_0143 - 26916490-26917719
Length = 409
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 406 MDLIQYIIFR*FCILALYN*LINKLEVLLY 495
MD+IQ +IF +L ++ L NK EVL+Y
Sbjct: 197 MDIIQDLIFHRGALLQGFHVLTNKEEVLVY 226
>01_05_0322 +
20932151-20932470,20933076-20933146,20933259-20933266
Length = 132
Score = 27.1 bits (57), Expect = 9.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -3
Query: 73 NCMKCTYITFCKKKNC 26
+C C Y+ FCK++ C
Sbjct: 10 SCRSCQYVNFCKREAC 25
>01_05_0169 + 18874799-18875057,18875103-18875338
Length = 164
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 20 RDAIFFFTKCYVCTFHAILSEV 85
RD FF T Y FHA+L EV
Sbjct: 65 RDRYFFLTPPYPPAFHALLGEV 86
>01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +3
Query: 54 YVHFMQFFLKCFCIEGHNLLILTSYNTYCDSP*DVSYYLWLLMFNFVAKHRRVP 215
Y+ FM F L F G +T +T Y LW L F+ +R+P
Sbjct: 1294 YLFFMYFTLLYFTFYGMMTTAITPNHTVAPIIAAPFYTLWNLFCGFMIPRKRIP 1347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,034,927
Number of Sequences: 37544
Number of extensions: 213970
Number of successful extensions: 384
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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