Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M17
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical ...    30   0.86 
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    27   6.1  
Z80214-2|CAB02264.2|  338|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical
           protein Y62F5A.10 protein.
          Length = 437

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = +3

Query: 255 EKIPITVITVCKLKHKYDYIDPCTRKSFLYR-------RRSSK*QVTVSNYTAASVPNGF 413
           E++ +  + V     KYD+  P T  SFLY        R+  K     S YT   +PNGF
Sbjct: 236 EQVVMMYVLVGSEDEKYDFF-PKTTGSFLYYGEMFVNVRKVEKMDEERSRYTIEVLPNGF 294

Query: 414 NTIHYI*VILYTGF 455
           +    + V ++TG+
Sbjct: 295 SNSVMMNVYVHTGW 308


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 70  CMKCTYITFCKKKNCISI 17
           C+K TY+   +KKNC+ I
Sbjct: 555 CIKLTYLNLTRKKNCLLI 572


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 118  NINKLCPSIQKHFRKNCMKCTYITFCKK 35
            N+ K+C    K+ +K C KC     CKK
Sbjct: 1284 NVQKMCKKCAKNVQKMCKKCA--KMCKK 1309


>Z80214-2|CAB02264.2|  338|Caenorhabditis elegans Hypothetical
           protein C27D8.4 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 78  LKCFCIEGHNLLILTS-YNTYCDSP*DVSYYLWLLMFNFVAKHRRVPVVSIHSCSV 242
           + C+ ++ + L +    Y  Y  S  +++ Y+     N VAK RRV  VS+H  +V
Sbjct: 205 MACYSLDSNFLKVYAGPYQAYASSKLNLAVYV-----NEVAKKRRVNTVSLHPGTV 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,355,544
Number of Sequences: 27780
Number of extensions: 221651
Number of successful extensions: 437
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)