Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M15
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    30   0.18 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   3.8  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   3.8  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   8.8  

>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 74  STAVEKKGRGRPKANGTQSETKEV---KKRGRPPAAAPKTKESAKSSDDEQAPV 226
           ST V+KK   +PK   T+ ET +V        PP   P  KE A + +  + PV
Sbjct: 180 STYVQKKEPEKPKKTKTKKETIQVIESLNNPTPPTDFPGAKEQASTGNAPKNPV 233


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
 Frame = +2

Query: 89  KKGRGRPKAN-------GTQSETKEVKKRGRPPAAA 175
           K+GRGRP+          ++S++   +KRGRPP  A
Sbjct: 339 KRGRGRPRLERPSGLPLDSKSQSLFKRKRGRPPKIA 374



 Score = 24.6 bits (51), Expect = 8.8
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = +2

Query: 80  AVEKKGRGR---PKANGTQSETKEVKKRGRPP---AAAPKTK 187
           A  ++GR R   PK     SE    +KRGRPP   +++P TK
Sbjct: 99  APRRRGRPRKYPPKPIDEGSEPIIKRKRGRPPKIKSSSPSTK 140


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +2

Query: 86  EKKGRGRPKANGTQ-SETK---EVKKRGRPPAAAPKT 184
           +KK + + KA G Q S TK   +VKK+G+  A  P+T
Sbjct: 19  QKKIKTKKKATGQQTSNTKNLRDVKKKGKQLAYVPRT 55


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 68  DGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTK 187
           DG      +   + +    ++E    +KRGRPP A  K K
Sbjct: 303 DGLNDSWSRQTNQVETENVENEAGVPRKRGRPPGARNKIK 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,234
Number of Sequences: 5004
Number of extensions: 18220
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)