Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M14
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0256 + 21331396-21332268                                         30   1.3  
07_03_1465 - 26729872-26730909                                         29   3.0  
08_01_0491 + 4290881-4291228,4291298-4291393                           28   4.0  
01_03_0150 + 13220224-13220468,13221903-13222124,13222164-132223...    27   6.9  
01_02_0110 + 11210174-11210292,11211635-11211752,11212426-112125...    27   9.1  

>02_04_0256 + 21331396-21332268
          Length = 290

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -2

Query: 378 PEGSVTDVIGECSCGRTKLSGKGAMMAHSS*LKGSNIF 265
           P  SVT++ GE + G+T+L  + A++A  S L  S +F
Sbjct: 59  PPASVTEIAGESASGKTQLCLQLALLAPLSPLSASCLF 96


>07_03_1465 - 26729872-26730909
          Length = 345

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 516 RC*RCPNRAALNIVHQ*VGRWPKPTTTPSDS 424
           RC    + A  NIVH    RW   TT+PS S
Sbjct: 173 RCFLAGDSAGGNIVHHVAQRWAASTTSPSSS 203


>08_01_0491 + 4290881-4291228,4291298-4291393
          Length = 147

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 335 PQLHSPITSVTDPSGLKLAPVSLHHINNECE--SLGVVVGF 451
           P+ H    +VTD +    A  + HH+ +E +  S  VV GF
Sbjct: 78  PRPHGATAAVTDTTSAAAAAAAAHHLQHEADGGSKHVVTGF 118


>01_03_0150 +
           13220224-13220468,13221903-13222124,13222164-13222376,
           13222549-13222691,13225813-13226387,13226776-13227155,
           13227256-13227342,13227469-13227799,13227880-13228290,
           13228373-13228432,13228561-13228761
          Length = 955

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 390 ASFRPEGSVTDVIGECSCGRTKLSGKGAMMAHSS*LKGSNIFKVI 256
           A FRPEG V D  G C     +  G G + A +S + G +  +V+
Sbjct: 50  AVFRPEGEVDDDDGGCG-DDEEADGDGGVAAMASGIGGGDAAEVV 93


>01_02_0110 +
           11210174-11210292,11211635-11211752,11212426-11212522,
           11212991-11213080,11213174-11213280,11213765-11213887,
           11214055-11214208,11214582-11214642,11214748-11215103,
           11216535-11218056,11218169-11218415
          Length = 997

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
 Frame = +2

Query: 185 MVKTKRIYHLPATHL-GLLLIPDKIITLNILLPFNQLECAIMAPLPDSFVLPQLHSPITS 361
           +VKTKR Y +       L  +P   +    L  ++ +    M PLP S VLP    PI  
Sbjct: 557 VVKTKRKYRVDILRCESLASLPPATLERLFLRDYDII--VSMVPLPSSSVLPGSSGPI-H 613

Query: 362 VTDPSGLKLAP--VSLHHINNECESLGVVVGFGQR 460
              PS   + P    + +   +C  L  V   GQR
Sbjct: 614 FGPPSYSSMTPWMKLVLYTAGDCGPLSAVFMKGQR 648


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,672,485
Number of Sequences: 37544
Number of extensions: 272839
Number of successful extensions: 625
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)