Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M14
         (523 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022853-4|AAB83981.1| 1456|Homo sapiens multidrug resistance pr...    32   1.4  
AF022853-5|AAB83982.1| 1400|Homo sapiens multidrug resistance pr...    29   7.5  

>AF022853-4|AAB83981.1| 1456|Homo sapiens multidrug resistance
           protein protein.
          Length = 1456

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 399 LTGASFR-PEGSVTDVIGECSCGRTKLSGKGAMMAHSS*LKGSNIFKVIILSG 244
           L G +F  PEG++  V+G+  CG++ L    A++A    ++G    K + LSG
Sbjct: 645 LNGITFSIPEGALVAVVGQVGCGKSSL--LSALLAEMDKVEGHVAIKGVNLSG 695


>AF022853-5|AAB83982.1| 1400|Homo sapiens multidrug resistance
           protein protein.
          Length = 1400

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 399 LTGASFR-PEGSVTDVIGECSCGRTKLSGKGAMMAHSS*LKGSNIFKVIIL 250
           L G +F  PEG++  V+G+  CG++ L    A++A    ++G    K  IL
Sbjct: 645 LNGITFSIPEGALVAVVGQVGCGKSSL--LSALLAEMDKVEGHVAIKTRIL 693


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,517,878
Number of Sequences: 237096
Number of extensions: 1582401
Number of successful extensions: 2561
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2561
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)