Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M14
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical ...    30   0.87 
AC017117-6|AAF16615.1|  201|Caenorhabditis elegans Hypothetical ...    28   3.5  
AF077537-12|AAC26281.1|  346|Caenorhabditis elegans Hypothetical...    27   6.2  

>AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical
           protein T23B12.6 protein.
          Length = 670

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 248 DKIITLNILLPFNQLECAIMAPLPDSFVLPQLHSPITSVTDPSG 379
           D I+ LN+        C  +  +PDSF    L   + SV DPSG
Sbjct: 18  DYIVNLNVGGRIFATSCNTLTWIPDSFFTSLLSGRMNSVKDPSG 61


>AC017117-6|AAF16615.1|  201|Caenorhabditis elegans Hypothetical
           protein F43C11.4 protein.
          Length = 201

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 254 IITLNILLP--FNQLECAIMAPLPDSFVLPQLHSPITSVTDPSGLKLAP 394
           I+TL +++P    + EC +    PD   +P   +P  S   P  + +AP
Sbjct: 3   ILTLFLIIPCLIAKTECCMRMVPPDDVYIPSTLAPEESTKSPGEITMAP 51


>AF077537-12|AAC26281.1|  346|Caenorhabditis elegans Hypothetical
           protein F16G10.14 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 254 IITLNILLPFNQL--ECAIMAPLPDSFVLPQLHSPITSVTDPSGLKLAPVSL 403
           I+TL + +P+  +  EC +    PD   +P   +P  S   P  + +AP S+
Sbjct: 3   ILTLFLTIPYFLVVSECCMRMVPPDDVYIPSTLAPEESTLAPGEITMAPGSV 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,971,391
Number of Sequences: 27780
Number of extensions: 245764
Number of successful extensions: 448
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)