Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_M13
(239 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 1.3
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 25 1.3
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc... 25 1.8
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 24 3.1
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 23 4.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 23 5.4
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 23 7.1
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 23 7.1
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 23 7.1
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 22 9.4
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 22 9.4
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 22 9.4
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 22 9.4
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M... 22 9.4
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 22 9.4
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.0 bits (52), Expect = 1.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 106 GYNRERPHTAMYSEIIILY 50
G ER H A Y+E+ ILY
Sbjct: 1302 GLGLERAHMAFYTELAILY 1320
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 1.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 147 ENPTHIQYRECII*GTTVNDHTPQ 76
E P++ ++C+ GT +N +TPQ
Sbjct: 59 EAPSNSNIKDCLAEGTLLNANTPQ 82
>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
Nse4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 24.6 bits (51), Expect = 1.8
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 170 RRKRCNIEKIQHIYNTGNVLFRVQP*TTTHRNV--QRNNNT 54
R+K NI++ + + NVL QP RN+ Q NN T
Sbjct: 142 RKKERNIQRRERLQKAPNVL--TQPTMLNERNITTQENNTT 180
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 120 PCIVYVLDFLDVTTFSPVSLCHYKLAFKNIL 212
P I ++ L T PVS CH+ L + +L
Sbjct: 577 PNIFLIISQLMENTMLPVSGCHFGLDYAELL 607
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 121 GMYYLGYNRERPHTAMYSEIIIL 53
G+ L YNRE P ++ +S + ++
Sbjct: 9 GIGMLDYNRENPESSGHSRVAVI 31
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 172 TGENVVTSRKSNTYTIQGMYYLGYNRER 89
T +NV T+ K + + +Y+L Y+R R
Sbjct: 664 TSQNVETNDKESNSESETLYHLIYDRYR 691
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 2 HEASIVFFFNFDRLLTIK 55
H+ S V F FDRLL ++
Sbjct: 1081 HQPSAVLFDQFDRLLLLQ 1098
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 132 YVLDFLDVTTFSPVSLCH 185
YV+DFL+ V+LCH
Sbjct: 533 YVIDFLEGPEVVLVALCH 550
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 117 IPCIVYVLDFLDVTTFSPVSL 179
+ CI Y++ +LD T S +L
Sbjct: 80 VMCITYMIQYLDKTALSYAAL 100
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 85 VVVHGCTLNNTFPVLYMCWIFSMLQRFRLFPYVTI 189
+V G N V+Y+C+ S+ +FP VTI
Sbjct: 395 LVDFGVPEENIIIVVYVCYSESIKALAYIFPKVTI 429
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 167 RKRCNIEKIQHIYNTGNVLF 108
++RC ++ I H+ GNV F
Sbjct: 92 QERCLLKDICHVNEDGNVAF 111
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 117 IPCIVYVLDFLDVTTFSPVSLCHYKLA 197
+P +VY + D TF CH KLA
Sbjct: 1758 LPAMVYTYEHSDPITFDLSVFCH-KLA 1783
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 132 YVLDFLDVTTFSPVSLCHYKL 194
+V+DFLD + V +C Y +
Sbjct: 350 FVVDFLDRFSLRIVEICRYDI 370
>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
3|||Manual
Length = 325
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 117 IPCIVYVLDFL 149
IPC+ YV++FL
Sbjct: 18 IPCLAYVVNFL 28
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 117 IPCIVYVLDFLDVTTFS 167
+ C+VY + FLD T+ S
Sbjct: 68 VMCLVYCIQFLDKTSNS 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 907,784
Number of Sequences: 5004
Number of extensions: 15959
Number of successful extensions: 47
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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