Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M13
         (239 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1395 - 26737972-26738418,26738505-26738738,26738887-267391...    26   4.9  
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116...    25   8.5  

>08_02_1395 -
           26737972-26738418,26738505-26738738,26738887-26739183,
           26739399-26739581,26739778-26739834,26739960-26740016,
           26740228-26740322,26740714-26740765,26740821-26740910
          Length = 503

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 110 IIHSLYC-ICVGFSRCYNVFACFLMS 184
           I+  +YC +CV F    +VF C+LMS
Sbjct: 327 IVLIIYCFLCVWFVGGLSVFHCYLMS 352


>05_06_0106 -
           25611239-25611295,25611388-25611477,25611582-25611669,
           25611757-25611836,25611968-25612120,25612403-25612546,
           25612633-25612884,25612985-25613116,25613207-25613287,
           25613368-25613488,25613930-25614025,25614195-25614298,
           25614481-25614567,25614690-25614803,25614871-25614930,
           25615007-25615102,25615316-25615366,25615457-25615562,
           25615642-25615713,25616117-25616172,25616446-25616508,
           25616636-25616764
          Length = 743

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 41  LLTIKYYYFAVHCGVWSFTVVP*IIHSLYCICVG--FSRCYNVFA 169
           L  + Y+Y     G ++F +    IH L CI  G   SR Y  +A
Sbjct: 203 LNALSYFYMVCSWGGYTFIINLIPIHVLLCIVTGRYSSRLYIAYA 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,226,035
Number of Sequences: 37544
Number of extensions: 83993
Number of successful extensions: 181
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)