Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M13
         (239 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    29   0.33 
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    27   1.3  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    27   1.3  
AC006615-7|AAK68227.1|  450|Caenorhabditis elegans Hypothetical ...    27   2.3  
U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine rece...    25   5.4  
CU457740-7|CAM36337.1|  363|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine r...    25   9.5  

>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 65  FAVHCGVWSFTVVP*IIHSLYCICVGFSRCY 157
           F + CG+ +F VV  ++H L C+   F + Y
Sbjct: 257 FLISCGIQAFFVVLPVVHILLCVYFEFIKTY 287


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
 Frame = +1

Query: 40   LTNNKVLLFRCTLRCVVVHGCTLNNTFPVLYM-CW 141
            LT +      C L C   H C L  T P  Y  CW
Sbjct: 1226 LTGSLCCCSECALTCHRNHDCRLKRTSPTAYCDCW 1260


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
 Frame = +1

Query: 40   LTNNKVLLFRCTLRCVVVHGCTLNNTFPVLYM-CW 141
            LT +      C L C   H C L  T P  Y  CW
Sbjct: 1226 LTGSLCCCSECALTCHRNHDCRLKRTSPTAYCDCW 1260


>AC006615-7|AAK68227.1|  450|Caenorhabditis elegans Hypothetical
           protein C36B7.1 protein.
          Length = 450

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +3

Query: 81  VCGRSRLYPK*YIP---CIVYVLDFL 149
           +CGRS+L P+ YIP    IV+ L FL
Sbjct: 218 LCGRSKLTPREYIPMIKSIVHGLKFL 243


>U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 2 protein.
          Length = 327

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 163 NVVTSRKSNTYTIQGMYYLGYNR 95
           N++ S+K   YT  G +Y+GY R
Sbjct: 174 NIIISKKLPVYTFGG-FYIGYER 195


>CU457740-7|CAM36337.1|  363|Caenorhabditis elegans Hypothetical
           protein C50E10.7 protein.
          Length = 363

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 109 NNTFPVLYMCWIFSMLQRFRLFPYV 183
           N+   ++ + W+F+M+ +   FPY+
Sbjct: 62  NSLIAIVILSWLFAMVGKILTFPYL 86


>Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical
           protein C06G8.4 protein.
          Length = 318

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 125 YCICVGFSRCYNVFACFL 178
           YC  +G   C+N+FA +L
Sbjct: 80  YCSLLGEGFCFNIFAAYL 97


>AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine
           receptor, class z protein5 protein.
          Length = 351

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 20  FFFNFDRLLTIKYYYFAVHCGVWSFTVVP 106
           F F+FD L    YYY  V   + +F  VP
Sbjct: 198 FPFSFDSLYMTIYYYLEVIATLSAFLYVP 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,034,896
Number of Sequences: 27780
Number of extensions: 91511
Number of successful extensions: 255
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)