Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M12
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    28   1.2  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    28   1.2  
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    28   1.2  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   2.8  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   2.8  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   3.8  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    26   5.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   5.0  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   5.0  
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    25   8.7  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    25   8.7  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   8.7  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 263 KRNIVEYAYQLSNSSLKETVRQRFPIQFRLILDGNYVKFINKRDGLALKL 412
           +R IV   +  S  +  E + +R   +  +I DG Y KF+NKR  L  KL
Sbjct: 163 QRIIVSKKWGFSQYARDEYIEKRS--RGEIIPDGCYAKFLNKRGSLQEKL 210


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +2

Query: 356 LDGNYVKFINKRDGLALKLGTETDDSG---DRIAYGDANDRTSERVSWTLVPEWEDNRLH 526
           L+   VK IN+ DGL LKL      S    D I++G   D  S+ +S   +P    + L 
Sbjct: 147 LELEQVKEINRLDGLLLKLQLGDVPSVNWLDDISFGKIKDFRSKHMSLVTIPILYLDFLQ 206

Query: 527 FTI-LYSQRGQYLK 565
           F+  +  QR  Y K
Sbjct: 207 FSFPVVFQRSYYPK 220


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 263 KRNIVEYAYQLSNSSLKETVRQRFPIQFRLILDGNYVKFINKRDGLALKL 412
           +R IV   +  S  +  E + +R   +  +I DG Y KF+NKR  L  KL
Sbjct: 163 QRIIVSKKWGFSQYARDEYIEKRS--RGEIIPDGCYAKFLNKRGSLQEKL 210


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
 Frame = +2

Query: 86  ASTTALDIESAASVSAIDQLYNDVLIGDYASAVAQTRRLENEQRGEIIDEVVTRLLRDAK 265
           A   +LDIE+  + +  +Q+  +  I     A     + +N+Q+GE++++VV     +A 
Sbjct: 554 AKQISLDIET--NKAQTEQVNREYSI---LEATLNALQKQNKQKGEVLEQVVAE--SEAA 606

Query: 266 RNIVEYAYQLSNSSLKETV--RQRFPIQFRLILD 361
           +N+VE +   S   LK  V  +++   Q  L LD
Sbjct: 607 KNMVE-SSNASIQQLKSEVADKEQTLAQLHLQLD 639


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 178 TGVVTDEHIIVQLING*DRGSAFNIQ 101
           TG +T+EH++VQ I G +R   ++++
Sbjct: 487 TGTLTEEHMVVQGIAGVNRKDPYSLE 512


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 497 VPEWEDNR-LHFTILYSQRGQYLKLAVDK 580
           V EW D R +HFT + + R   LKLA+ K
Sbjct: 150 VHEWIDQRQVHFTSMINYRTSQLKLALLK 178


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 302 SSLKETVRQRFPIQF 346
           SS+ ETVR +FP++F
Sbjct: 362 SSINETVRSKFPVRF 376


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 266 RNIVEYAYQLSNSSLKETVRQRFPIQFRLILD 361
           R I+    QLS  +L E ++Q +P+++R  +D
Sbjct: 742 REIIREEDQLSRVTLLEYLKQLYPVEWRNFVD 773


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 42  WTYHLSSWYCV*VCWRPPPHWILKALPRSQPLI 140
           + YH   ++C+   ++  PHWI+K L  ++ LI
Sbjct: 130 YKYH---YWCLFPSFKETPHWIVKDLSPAESLI 159


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 293 LSNSSLKETVRQRFPI-QFRLILDGNYVKFINKRDGLALKLGTETDDSGDRIAYGDANDR 469
           + N  L E V+    I +FRL   GN+    N   GL   LG+   D    + +G  +  
Sbjct: 141 IENGRLGEVVQFESHIDRFRLFRKGNWKDVPNPGCGLVYDLGSHLIDQAITL-FGTPHSV 199

Query: 470 TSERVSWTLVPEWE 511
           T++  S   +P  E
Sbjct: 200 TAKLESQRQIPPLE 213


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 190 LCHGTGVVTDEHIIVQLIN 134
           L  GTG+VT   +I+QLIN
Sbjct: 52  LPRGTGIVTRRPLILQLIN 70


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/101 (19%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
 Frame = +2

Query: 95  TALDIESAASVSAIDQLYNDVL---IGDYASAVAQTRRLENEQRGEIIDEVVTRLLRDAK 265
           +A+D+      S +D +  ++L   +G   + +  +  + +E   +++D V  + L    
Sbjct: 604 SAIDLGFQFLFSPMDDILLNLLNKQLGIEVTEMTGSDLVYDETDTKVLDMVEVKKLNILW 663

Query: 266 RNIVEYAYQLSNSSLKETVRQRFPIQFRLILDGNYVKFINK 388
             ++EY       +++E+VR  +  QF+L +D  +   ++K
Sbjct: 664 EKLLEYVSVCFFINVEESVRISWISQFQLFIDEMFPDHLSK 704


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,979
Number of Sequences: 5004
Number of extensions: 42295
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)