Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_M12
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 34 0.10
01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974... 33 0.14
07_03_0441 + 18256103-18258076 31 0.96
05_04_0249 - 19365952-19366020,19366097-19366211,19366450-193665... 30 1.7
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 29 2.2
02_05_0577 - 30100084-30100251,30100474-30100548,30100631-301007... 29 3.9
10_02_0135 + 5674786-5675040,5675179-5675490,5676505-5677010,567... 28 5.1
04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756... 28 5.1
08_01_0618 - 5394841-5395036,5395179-5395244,5395727-5395769,539... 28 6.8
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/89 (24%), Positives = 40/89 (44%)
Frame = +2
Query: 134 IDQLYNDVLIGDYASAVAQTRRLENEQRGEIIDEVVTRLLRDAKRNIVEYAYQLSNSSLK 313
+D++Y + G VA E+ ++D+ V R+LRDA+ L++ L+
Sbjct: 145 LDRVYRTAMRGRDMQVVAAAHGGGGEEEAGVVDDEVVRVLRDAEEGKAVERLLLADRQLR 204
Query: 314 ETVRQRFPIQFRLILDGNYVKFINKRDGL 400
Q I+ L+LD + + N D +
Sbjct: 205 HLPEQLGRIRGLLVLDVSRNQLKNVPDAI 233
>01_06_1760 -
39697079-39697162,39697280-39697340,39697415-39697479,
39697579-39697860,39697938-39698012,39698121-39698195,
39698343-39698399,39698653-39698726,39698912-39699055,
39699608-39699662,39700027-39700149,39700276-39700320,
39701068-39701160,39701249-39701662
Length = 548
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +2
Query: 227 IDEVVTRLLRD--AKRNIVEYAYQLSNSSLKETVRQRFPIQFRLILDGNYVKFINKRDGL 400
+ V+T+ D A+R ++ A++LS +++ R ++ DGN+ + INK DGL
Sbjct: 478 VKNVITKFSTDPKARRTVIIIAHRLS--TIQAADRIIVMENGNIVEDGNHSELINKHDGL 535
Query: 401 ALKLGTETDDSGD 439
+L +D+ D
Sbjct: 536 YSRLARRQNDALD 548
>07_03_0441 + 18256103-18258076
Length = 657
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 90 PPPHWILKALPRSQPLINCTMMCSSVTTPVPWHKRV 197
PPP WI S P SS TP PW RV
Sbjct: 28 PPPEWIEPYTDLSDPRPYAASSASSSPTPSPWLARV 63
>05_04_0249 -
19365952-19366020,19366097-19366211,19366450-19366520,
19366759-19366797,19367156-19367238,19367366-19367438,
19367826-19367884,19368457-19368511
Length = 187
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 350 LILDGNYVKFINKRDGLALKLGTETDDSGDRIAYGDAND-RTSERVSWTL 496
L+ V+F+ + L +K+G + ++SG+ + G N R S V+W L
Sbjct: 87 LLFQTTRVRFVFDDEALEVKVGDQLEESGENVFVGGKNRWRYSTFVNWEL 136
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 29.5 bits (63), Expect = 2.2
Identities = 27/126 (21%), Positives = 54/126 (42%)
Frame = +2
Query: 89 STTALDIESAASVSAIDQLYNDVLIGDYASAVAQTRRLENEQRGEIIDEVVTRLLRDAKR 268
STT +S+ ++D L N ++ S A+ R + + ++ E+ L K
Sbjct: 1104 STTEPSTPRLSSLGSVDLLVNGSVVETKLSLYAKLDRKKKDPEEVVMLEL---LGSGGKV 1160
Query: 269 NIVEYAYQLSNSSLKETVRQRFPIQFRLILDGNYVKFINKRDGLALKLGTETDDSGDRIA 448
N+V+ + LS + +++ + +Q RL + NY+ D L + D+ R +
Sbjct: 1161 NVVQSSRGLSVKTKLHSLKIKDELQGRLSMSSNYLACSVINDNLETVDSSSPDEEDHRKS 1220
Query: 449 YGDAND 466
+ D
Sbjct: 1221 FSVEED 1226
>02_05_0577 -
30100084-30100251,30100474-30100548,30100631-30100755,
30101538-30101609,30102016-30102108,30102333-30102419,
30103049-30103135,30103448-30103522,30104142-30104238
Length = 292
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +3
Query: 312 RKLSDSASLYNSDLS*METMLNLSTRETV*LSSSAQKRTTQATG*RT 452
R +SDS SL N++L ETM + TV + A + +Q TG RT
Sbjct: 116 RLVSDSESLKNANLQNNETMKKEQSGTTV--TQGADRTKSQVTGNRT 160
>10_02_0135 +
5674786-5675040,5675179-5675490,5676505-5677010,
5677057-5677103,5677457-5677918,5678071-5678294
Length = 601
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 392 DGLALKLGTETDDSGDRIAYGDAND 466
DG +G + DD+GD AYGD +D
Sbjct: 414 DGEGDGVGDDDDDAGDGEAYGDGDD 438
>04_04_1509 -
34074206-34074398,34074506-34074777,34075411-34075608,
34076092-34076187,34076318-34076500,34076597-34076799,
34076887-34077013,34077098-34077292,34077400-34077540,
34077669-34077812,34077876-34078040,34078776-34078976,
34079049-34079195,34079275-34079427,34079731-34079833,
34079954-34080069,34080168-34080349,34080442-34080541,
34081200-34081527,34081605-34081834,34081979-34082110,
34082787-34082859,34083274-34083338
Length = 1248
Score = 28.3 bits (60), Expect = 5.1
Identities = 27/90 (30%), Positives = 40/90 (44%)
Frame = +2
Query: 110 ESAASVSAIDQLYNDVLIGDYASAVAQTRRLENEQRGEIIDEVVTRLLRDAKRNIVEYAY 289
+ AA +SA+ L + + S V LE ++ +TR RD + +IV Y
Sbjct: 385 DDAAQLSALQILVEIGFVDNPESCVEWISLLERFLPRQV---AITRAKRDWELDIVS-RY 440
Query: 290 QLSNSSLKETVRQRFPIQFRLILDGNYVKF 379
QL K+ RQ+F R + GN V F
Sbjct: 441 QLMEHLSKDDARQQFLRILRTLPYGNSVFF 470
>08_01_0618 -
5394841-5395036,5395179-5395244,5395727-5395769,
5396119-5396238,5396653-5396731,5396910-5397177,
5397262-5397305,5397431-5397502,5397756-5397825,
5397929-5397999
Length = 342
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 311 KETVRQRFPIQFRLILDGNYVKFINKRDGLALKLGTETDDSGDR 442
++ VR+R PI+ RLI G +K IN + + E D D+
Sbjct: 80 EKEVRERLPIKKRLIFPGKTMKKINAKKKKKVVPKLEDDSKTDK 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,444,443
Number of Sequences: 37544
Number of extensions: 302506
Number of successful extensions: 799
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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