Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M10
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0560 + 30244814-30244871,30244979-30245140,30245725-302457...    29   2.0  
10_07_0080 - 12704866-12705224,12705389-12705512,12705905-127060...    29   3.5  
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159...    28   6.2  
01_06_1194 - 35313132-35313154,35314462-35314604,35314751-353154...    27   8.2  

>01_06_0560 +
           30244814-30244871,30244979-30245140,30245725-30245786,
           30246170-30246214,30246358-30246363,30246424-30246624,
           30246735-30248024
          Length = 607

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/32 (28%), Positives = 23/32 (71%)
 Frame = +2

Query: 227 MEKYSSVLYLKLYQQPVDVALLSKN*PSAPYF 322
           ME+Y+++L++ ++++P+D   L ++   +P F
Sbjct: 517 MERYANILHISIFRKPLDERTLPRSLQESPVF 548


>10_07_0080 -
           12704866-12705224,12705389-12705512,12705905-12706041,
           12707971-12708106,12710346-12710759
          Length = 389

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +1

Query: 214 PCTKDGKIFKRALPEALPTACGRCTPKQKLAFRTLLLAIRAKSEPRFLELLDKYDPNRAS 393
           PC  D +   R + ++L         ++  A     L++  KS PR   +++  +P  A 
Sbjct: 313 PCLHDSRRLNRVIDKSLNGQYSTRAVQKAAAIAYQCLSVSPKSRPRMSAVVEALEPLLAM 372

Query: 394 RDGL 405
            DG+
Sbjct: 373 DDGI 376


>10_08_1042 -
           22515298-22515354,22515614-22515709,22515806-22515988,
           22516277-22516365,22516481-22516722,22517008-22518116
          Length = 591

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 202 SHTCNNQEEFDHSVILHLCLCYHVVG 125
           S+TC N  + D + I+H+ LC  V+G
Sbjct: 367 SNTCVNYSDVDENGIVHMMLCRVVMG 392


>01_06_1194 -
           35313132-35313154,35314462-35314604,35314751-35315444,
           35315746-35315895,35316011-35316419
          Length = 472

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 389 PVEMDFIRFFKQTGGLASNQ*FNSLVILIPSIWLLLQYEG 508
           P+  D  RF   T  L +     +L I IPSIW L +Y G
Sbjct: 381 PLATDTRRFVALTAVLMAV--LYALAIAIPSIWTLFEYSG 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,980,870
Number of Sequences: 37544
Number of extensions: 289344
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)