Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M09
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...   167   3e-42
U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical pr...    33   0.084
U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical pr...    32   0.26 
AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    30   1.0  
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical...    27   9.7  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score =  167 bits (407), Expect = 3e-42
 Identities = 73/124 (58%), Positives = 103/124 (83%)
 Frame = +3

Query: 78  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 257
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVRRRF+G   MP IG+GS+++TR +LP
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70

Query: 258 SGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLRS 437
           +G++KVLV NV++L++L+MQ+ KY  EI HGVS+K RK IVERA QL+I++TN  ARLR+
Sbjct: 71  NGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTNGNARLRT 130

Query: 438 QENE 449
           +E+E
Sbjct: 131 EESE 134


>U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical
           protein C14F11.4a protein.
          Length = 345

 Score = 33.5 bits (73), Expect = 0.084
 Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
 Frame = +3

Query: 66  YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 239
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 240 TRHMLPSGFRKV--LVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVT 413
             + L    +K+  ++  +R              ++A    +++ K I +R  +L   +T
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120

Query: 414 NAAARLRSQENE 449
                +   +NE
Sbjct: 121 GKTQFVAPLQNE 132


>U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical
           protein C14F11.4b protein.
          Length = 341

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
 Frame = +3

Query: 66  YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 239
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 240 TRHMLPSGFRKV--LVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVT 413
             + L    +K+  ++  +R              ++A    +++ K I +R  +L   +T
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120

Query: 414 NAA 422
             A
Sbjct: 121 FVA 123


>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 198 QYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQN 320
           QYLM NI        R   PSGF K L+  +  L+I   QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253


>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical protein
            F23D12.2 protein.
          Length = 1322

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = +3

Query: 255  PSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLR 434
            PS  RK+LV NV+ L  ++    +Y A  +  +    R+     A+QLSI ++  A+R  
Sbjct: 1097 PSSTRKILVSNVK-LPAILQSKDEYIA--SQKLMQDLREKTQNLAKQLSI-ISAQASRKS 1152

Query: 435  SQE 443
            S E
Sbjct: 1153 SDE 1155


>AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical
           protein Y116A8C.21 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 199 NT*CPTLVMVQIRRPVTCYPAVFVKSWSTTFANWRS**CRTG 324
           N+ CP      IRRPV        +SWS T   W +  C+ G
Sbjct: 101 NSTCPAFPETDIRRPVN-------ESWSKTENGWTTRLCKNG 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,887,708
Number of Sequences: 27780
Number of extensions: 227399
Number of successful extensions: 621
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)