Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M08
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...   176   8e-45
U97403-8|AAB52470.1|  720|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z66500-2|CAA91304.2|  500|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U49947-2|AAA93421.2| 1032|Caenorhabditis elegans Guanylyl cyclas...    28   5.6  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    27   7.4  
U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U23139-12|AAU20847.1|  262|Caenorhabditis elegans Hypothetical p...    27   9.7  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    27   9.7  
AC006814-2|AAP46269.1|  430|Caenorhabditis elegans Aldehyde dehy...    27   9.7  
AC006814-1|AAP46268.1|  499|Caenorhabditis elegans Aldehyde dehy...    27   9.7  

>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score =  176 bits (429), Expect = 8e-45
 Identities = 92/187 (49%), Positives = 117/187 (62%)
 Frame = +3

Query: 9   ELCVMAMKXXXXXXXXXXXXIWMVDSRGLIVKNRPEGGLNEHKEKFAKDHPPVRTLAEVV 188
           E+CV  M             I+MVD  GLI  +R +  L E   KFAKD P  + L EVV
Sbjct: 349 EMCVRQMMDEGLSEEEACGRIYMVDIEGLITTSRSKS-LGERHVKFAKDLPDTKNLLEVV 407

Query: 189 DLITPSVLIGAAAIGGAFTPDILRKMGACNDRPVIFALSNPTSKAECTAEEAYSNTDDRA 368
             + P  LIGA+ + GAFT DI+++M   N RP+IFALSNPTSKAECTAE AY  T+   
Sbjct: 408 KTVKPGALIGASTVAGAFTEDIIKEMARLNPRPIIFALSNPTSKAECTAETAYRCTNGAV 467

Query: 369 IFASGSPFPEYRTKDGRVLRPGQGNNSYIFPGLALGIICAGIVDISDDFMLLAAEALAEI 548
           +FASGSPF E    +G++ +PGQGNN+YIFPG+ALG +     +I D   LLAA  +AE 
Sbjct: 468 LFASGSPF-ENVEMNGKLYKPGQGNNAYIFPGVALGAVLFRTKNIPDKLFLLAARMVAEA 526

Query: 549 VSQDDLD 569
           VS+  L+
Sbjct: 527 VSEKSLN 533


>U97403-8|AAB52470.1|  720|Caenorhabditis elegans Hypothetical
           protein T10E9.2 protein.
          Length = 720

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 243 TPDILRKMGACNDRPVIFALSNPTSKAECTAEEAYSN 353
           T D L+++ ACN R + F++ N   +    A ++YSN
Sbjct: 69  TEDHLKRIHACNYRHIKFSIDNSLIELRIAAGKSYSN 105


>Z66500-2|CAA91304.2|  500|Caenorhabditis elegans Hypothetical
           protein T05C12.2 protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 120 GLNEHKEKFAKDHPPVRTLAEVVDLITPSVLIGAAAI-GGAFTPDILRKM 266
           G +E+ E +   H   RTLA  ++LI PS++I    I G    PD   K+
Sbjct: 241 GTDEYHELYFYIHIRRRTLAYGINLIIPSLVISMMTILGFTLPPDACEKI 290


>U49947-2|AAA93421.2| 1032|Caenorhabditis elegans Guanylyl cyclase
           protein 11 protein.
          Length = 1032

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 387 PFPEYRTKDGRVLRPGQGNNSYIFPGLA-LGI 479
           P PE+ T   R+L  G+GN S I+  L  LGI
Sbjct: 326 PLPEWATLAARMLPDGKGNYSIIWKNLTQLGI 357


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 23/75 (30%), Positives = 36/75 (48%)
 Frame = +2

Query: 215 RRGGYRRRVHSGHTAQDGRLQRPTRHIRALEPDQQGGVHRRGGLQQHRRPRYIRVGFPVP 394
           RRGG   R  S  ++     + P RH    EP++QG   ++  L+Q ++ +         
Sbjct: 175 RRGGRGGRSGSSSSSSSSESRSPGRHE---EPEKQG---KKEELKQLKKQKS-------E 221

Query: 395 GVPHQGRSGAASRAR 439
           GV H+GRSG+    R
Sbjct: 222 GVEHRGRSGSPGGRR 236


>U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical
           protein F38B6.4 protein.
          Length = 974

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 192 LITPSVLIGAAAIGGAFTPDILRKMGACNDRPVIFALSNPTSKAE 326
           L+  ++L GAA IGG      L+K G  ND  ++  +    +K E
Sbjct: 445 LVKKTLLPGAAQIGGFGAVLDLKKAGFSNDSQLVVGIDGVGTKIE 489


>U23139-12|AAU20847.1|  262|Caenorhabditis elegans Hypothetical
           protein F13H8.1b protein.
          Length = 262

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 347 QQHRRPRYIRVGFPVPGVPHQGRSGAASRAREQLL 451
           +QH  P+Y R  F   G+PH  R+  A +  ++ +
Sbjct: 186 KQHYSPQYFREQFEREGIPHWKRNLLADKKSKEAI 220


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +3

Query: 306  NPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRTKDGRVLRPGQGNNSYIFP 461
            +P   AE    E Y NT D  I  S +P P   T+      PG   + Y  P
Sbjct: 1687 SPPQPAEPNHVEEYQNTVDTIIEKSATPAPAPVTQPAVQPAPGPVEHRYEIP 1738


>AC006814-2|AAP46269.1|  430|Caenorhabditis elegans Aldehyde
           dehydrogenase protein12, isoform b protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +2

Query: 248 GHTAQDGRLQRPTRHIRALEPDQQGGVHRRGGLQQHRRPRYIRVGFPVPGVPHQGRSGAA 427
           G    +G LQR   ++ + +  Q+GGV  RGG++ H  P  +  G         G S  A
Sbjct: 334 GANINEGHLQRILGYVESAK--QEGGVVLRGGVRVH--PTGVEGGAYFEPAIITGLSDEA 389

Query: 428 SRAREQL 448
              RE++
Sbjct: 390 RAVREEI 396


>AC006814-1|AAP46268.1|  499|Caenorhabditis elegans Aldehyde
           dehydrogenase protein12, isoform a protein.
          Length = 499

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +2

Query: 248 GHTAQDGRLQRPTRHIRALEPDQQGGVHRRGGLQQHRRPRYIRVGFPVPGVPHQGRSGAA 427
           G    +G LQR   ++ + +  Q+GGV  RGG++ H  P  +  G         G S  A
Sbjct: 334 GANINEGHLQRILGYVESAK--QEGGVVLRGGVRVH--PTGVEGGAYFEPAIITGLSDEA 389

Query: 428 SRAREQL 448
              RE++
Sbjct: 390 RAVREEI 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,457,765
Number of Sequences: 27780
Number of extensions: 204072
Number of successful extensions: 627
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)