Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_M07
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe... 47 3e-06
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 31 0.14
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.24
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 28 1.3
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.3
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 27 2.3
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 27 3.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 4.0
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 26 4.0
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 4.0
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 26 5.2
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 6.9
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 25 6.9
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 25 6.9
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 25 6.9
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S... 25 9.1
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 25 9.1
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce... 25 9.1
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 9.1
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 9.1
>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 233
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +1
Query: 376 HEET-QDKNAEEIEDELNELVDEEFLMEYQKRRMQELMSQLTKTPKFGKVFNLDTKEEFL 552
HE ++K+ +E+ EL + D+EFL Y+ +RMQE Q++K KFG V+ + +K E+
Sbjct: 42 HENRLENKDLDELA-ELEDEEDDEFLQMYRNKRMQEWKDQMSKA-KFGSVYPI-SKPEYT 98
Query: 553 DAIDKEDHKVTVIIHI*Q 606
+ +V V++H+ Q
Sbjct: 99 AEVTDASKEVFVVVHMFQ 116
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 31.1 bits (67), Expect = 0.14
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +1
Query: 208 EEPHVNNWTGSASNTGPKGVLED-WRRFK-QLEAENRSEMAKERIALAKKLTLSVKTDHE 381
++P N W+ A +G K ++E W + E R A+ + AK+ + + E
Sbjct: 108 DDPSDNTWSSEADCSGCKQLIEAYWNEHGGRPEPSKRKRTARPKKPEAKEPSPKSRKTDE 167
Query: 382 ETQDKNAEEIEDELNE 429
+ DK++ E +++NE
Sbjct: 168 DKHDKDSNEKIEDVNE 183
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 0.24
Identities = 28/99 (28%), Positives = 49/99 (49%)
Frame = +1
Query: 292 QLEAENRSEMAKERIALAKKLTLSVKTDHEETQDKNAEEIEDELNELVDEEFLMEYQKRR 471
Q EA+NR +E L + S K E KN + + +LNEL + ++ +QK
Sbjct: 17 QEEAKNRRRQFQEEDQLRRNNKSSNKLSQNEEDAKNMDSVVQKLNEL--QNNVVAFQK-L 73
Query: 472 MQELMSQLTKTPKFGKVFNLDTKEEFLDAIDKEDHKVTV 588
+QE KTP + +L+ EF++ ++ +++TV
Sbjct: 74 LQE------KTP-LSSIQDLEGFREFMENLEHR-YEMTV 104
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +1
Query: 223 NNWTGSASNTGPKGVLEDWRRFKQLEAENRSEMAKERIALAKKLTLSVKTDHEETQDKNA 402
N W + G + VL+ W++ K+L A+ E AKK+ + ++ Q + +
Sbjct: 52 NTWEPEQNLFGAEKVLKKWKKRKKLIAKGLLEPFDAEDNEAKKMKREKEILRQQRQKRKS 111
Query: 403 EEIEDELNELVDEEF 447
E +L++ V E+F
Sbjct: 112 E--LTQLSQKVKEKF 124
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +1
Query: 292 QLEAENRSEMAKERIALAKKLTLSVKTDHE--ETQDKNAEEIEDELNEL 432
+ E +RS ++E+ L K+ VKT H+ E +DK +E+++ +N+L
Sbjct: 133 ETEVTSRSTSSQEKDELEKQ----VKTLHDLNEQKDKKIKELKERINDL 177
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 193 VEMPSEEPHVNNWTGSASNTGPKGVLED 276
V S E H N++ GS SN+ P G L +
Sbjct: 410 VNNTSSEQHHNSYRGSVSNSQPSGNLSE 437
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 26.6 bits (56), Expect = 3.0
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +1
Query: 274 DWRRFKQLEAENRSEMAKERIALAKKLTLSVKTDHEETQDKNAEEIEDELNELVDEEFLM 453
D R K R + KE AL+K + + + + K +ED L+ L E +
Sbjct: 118 DTRTLKIARYRMRQNLEKELKALSKDSETNEEQERKFWLTKLQIAVEDTLDSLPHIEMEI 177
Query: 454 EYQKRRMQELM 486
+ KR ELM
Sbjct: 178 DLLKRAQAELM 188
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 4.0
Identities = 25/104 (24%), Positives = 51/104 (49%)
Frame = +1
Query: 181 NSSKVEMPSEEPHVNNWTGSASNTGPKGVLEDWRRFKQLEAENRSEMAKERIALAKKLTL 360
+ S+ E + VN+ SN+ + + ++ LE E +S ++ A + +
Sbjct: 3975 SDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSN--EQSAANNESDLV 4032
Query: 361 SVKTDHEETQDKNAEEIEDELNELVDEEFLMEYQKRRMQELMSQ 492
S + D++ +DK+ +E EDE E+ D+ + + + +QE SQ
Sbjct: 4033 SKEDDNKALEDKDRQEKEDE-EEMSDDVGIDDEIQPDIQENNSQ 4075
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 379 EETQDKNAEEIEDELNELV 435
+E QD++AEEIEDE ++
Sbjct: 13 DEKQDRDAEEIEDEGKNII 31
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 373 DHEETQDKNAEEIEDELNELVDEE 444
++EE D N EE EDE ++ DEE
Sbjct: 102 ENEEEADANEEEEEDEEDDEEDEE 125
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 211 EPHVNNWTGSASNTGPKGVLEDWRRFKQLEAENRSEMAKERIALAKKL 354
E H+ SN G +D ++ E E +E+IAL KKL
Sbjct: 266 EQHIKKLLDGESNEEGGGEFQDHGMRSEINEEVLEEEDEEKIALLKKL 313
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 358 LSVKTDHEETQDKNAEEIEDELNELVDE 441
L+++ E+ ++ EE+E L ++VDE
Sbjct: 836 LAIERQEEQESEEEYEEVEQSLMDVVDE 863
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 6.9
Identities = 20/86 (23%), Positives = 36/86 (41%)
Frame = +1
Query: 184 SSKVEMPSEEPHVNNWTGSASNTGPKGVLEDWRRFKQLEAENRSEMAKERIALAKKLTLS 363
S++ + PS+EP V T SAS D + E ++ +E+ + K
Sbjct: 441 SAEEQKPSKEPEVKPTTPSASKVEEPSKKRD--EDNHQKEETVTQPKREKTPVEKSFPKP 498
Query: 364 VKTDHEETQDKNAEEIEDELNELVDE 441
+ ++D E E++ E+ DE
Sbjct: 499 ASSPVTFSEDVKKEPSEEKKLEVSDE 524
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 196 EMPSEEPHVNNWTGSASNTG 255
EM +E P +N+W +SN+G
Sbjct: 55 EMDAEIPAINSWKKDSSNSG 74
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 147 RSFIVTTTAIVVNFLTQKLIIQSNHFDTVNDS 52
R ++ A+VVN ++ IQ NHFD +D+
Sbjct: 352 RESVLDFFAMVVNANHKRQSIQVNHFDITSDA 383
>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 196 RLLMNLSPHRHFCSHLQI-LHRHYYCNSCEFSHPKAYHP 83
R L N P+R FC + I LH+ +S E ++ YHP
Sbjct: 83 RWLRNAPPYRWFCHYFPIRLHKTTELDS-EKNYIFGYHP 120
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.0 bits (52), Expect = 9.1
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Frame = +1
Query: 304 ENRSEMAKE--------RIALAKKL--TLSVKTDHEET--QDKNAEEIEDELNELVDEEF 447
E R E AKE R+ L++ + T+ K ++ET +DK EE++ EL D+EF
Sbjct: 27 ERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYDETIIEDKPDEELQAELK---DDEF 83
Query: 448 LMEYQKRRMQELMSQLTKTPKFGKVFNLDTKEEFLDAIDKEDHK 579
+ + R ++ L T K D E LD + +
Sbjct: 84 SAYFSEER--KVPKLLVTTSKRASRKCYDFASELLDCFPNAEFR 125
>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 214
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 193 LLMNLSPHRHFC-SHLQILHRHY 128
LL SP R + H QI+HRHY
Sbjct: 111 LLYLSSPERQYLLRHQQIVHRHY 133
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/35 (22%), Positives = 16/35 (45%)
Frame = -3
Query: 214 VPHLAFRLLMNLSPHRHFCSHLQILHRHYYCNSCE 110
V ++ + + P +C + + YYCN C+
Sbjct: 179 VENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCK 213
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 9.1
Identities = 21/92 (22%), Positives = 38/92 (41%)
Frame = +1
Query: 316 EMAKERIALAKKLTLSVKTDHEETQDKNAEEIEDELNELVDEEFLMEYQKRRMQELMSQL 495
E+ E+ L +K V + + D+ E DE+ ELV KR+ + +S +
Sbjct: 226 EIEFEKFKLEQKKQPDVASSDGDFSDEPESEERDEVPELVSSSKSKSKTKRKARTALSSV 285
Query: 496 TKTPKFGKVFNLDTKEEFLDAIDKEDHKVTVI 591
+ + +F + D DK + + T I
Sbjct: 286 SMSS--SALFRNEGLTLLDDRFDKVEEEYTPI 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,142
Number of Sequences: 5004
Number of extensions: 40531
Number of successful extensions: 177
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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