Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M06
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841    179   1e-45
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245...   167   3e-42
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...   153   8e-38
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...   126   8e-30
02_02_0355 + 9312814-9313650                                           30   1.3  
02_02_0511 + 11072699-11073146,11076148-11076365                       27   6.8  

>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score =  179 bits (436), Expect = 1e-45
 Identities = 88/130 (67%), Positives = 103/130 (79%)
 Frame = +1

Query: 61  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 240
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59

Query: 241 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 420
           S+KKTRH LP+ F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I 
Sbjct: 60  SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV 119

Query: 421 LTNAAARLRS 450
           +TN  ARLRS
Sbjct: 120 VTNKLARLRS 129


>09_04_0633 -
           19123930-19124009,19124240-19124344,19124453-19124543,
           19124647-19124709,19126318-19126368,19126878-19126962,
           19127102-19127283,19128493-19128582
          Length = 248

 Score =  167 bits (407), Expect = 3e-42
 Identities = 81/119 (68%), Positives = 95/119 (79%)
 Frame = +1

Query: 61  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 240
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59

Query: 241 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSI 417
           S+KKTRH LP+ F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60  SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDI 118


>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score =  153 bits (371), Expect = 8e-38
 Identities = 71/98 (72%), Positives = 83/98 (84%)
 Frame = +1

Query: 157 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 336
           +WR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 99  SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158

Query: 337 KYCAEIAHGVSSKKRKAIVERAQQLSIRLTNAAARLRS 450
            YCAEIAH VS+KKRK IVERA QL I +TN  ARLRS
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRS 196



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +1

Query: 61  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 153
           MA+ P+    IVKKR K+F R  SDRY  LK
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score =  126 bits (305), Expect = 8e-30
 Identities = 59/94 (62%), Positives = 74/94 (78%)
 Frame = +1

Query: 55  FKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 234
           ++M + P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIG
Sbjct: 321 YEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIG 379

Query: 235 YGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 336
           YGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 380 YGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413


>02_02_0355 + 9312814-9313650
          Length = 278

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +3

Query: 219 DAQHWLWFK*EDPSHATQRFS*SLGPQRSRTGDPDDAEQEILRGNRTWRLLEKTEGYSR 395
           D+Q WL    +D  HA         P+    GD  D + E  R  R W      EG+ R
Sbjct: 3   DSQQWLHGDGDDVEHAAAMTMTEAAPRDDEPGDRRDVDDENERRQRRW----TAEGFGR 57


>02_02_0511 + 11072699-11073146,11076148-11076365
          Length = 221

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 437 AAALVSLMLSCWARSTIAFRFFEETPCAISAQYFLF 330
           AA  V++  SC     + F +F + PC   AQY+ +
Sbjct: 148 AAGFVNIDSSCCPGPCMPFPYFNQPPCDNRAQYWFW 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,898,487
Number of Sequences: 37544
Number of extensions: 291709
Number of successful extensions: 775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)