Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M06
         (516 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p pro...   237   5e-63
AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC...   237   5e-63
Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal prot...   233   1e-61
U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal prot...   233   1e-61
AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p pro...   233   1e-61
AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB...   233   1e-61
AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA...   233   1e-61
X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal prot...   184   6e-47
BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p pro...    68   7e-12
AY128419-1|AAM75012.1|  741|Drosophila melanogaster GH14073p pro...    29   2.8  
AF239609-1|AAF63501.1|  741|Drosophila melanogaster SP1173 protein.    29   2.8  
AE014296-1144|AAN12079.1|  741|Drosophila melanogaster CG10121-P...    29   2.8  
AE014296-1143|AAN12078.1|  741|Drosophila melanogaster CG10121-P...    29   2.8  
AE014296-1142|AAF50650.1|  741|Drosophila melanogaster CG10121-P...    29   2.8  
AE014296-1141|AAN12077.1|  741|Drosophila melanogaster CG10121-P...    29   2.8  

>BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p
           protein.
          Length = 147

 Score =  237 bits (581), Expect = 5e-63
 Identities = 109/132 (82%), Positives = 117/132 (88%)
 Frame = +1

Query: 55  FKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 234
           FKM IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIG
Sbjct: 12  FKMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIG 71

Query: 235 YGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLS 414
           YGSNK+TRHMLP+GF+K LVHNVRELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS
Sbjct: 72  YGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLS 131

Query: 415 IRLTNAAARLRS 450
           +RLTN   RLRS
Sbjct: 132 VRLTNPNGRLRS 143


>AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC,
           isoform C protein.
          Length = 147

 Score =  237 bits (581), Expect = 5e-63
 Identities = 109/132 (82%), Positives = 117/132 (88%)
 Frame = +1

Query: 55  FKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 234
           FKM IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIG
Sbjct: 12  FKMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIG 71

Query: 235 YGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLS 414
           YGSNK+TRHMLP+GF+K LVHNVRELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS
Sbjct: 72  YGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLS 131

Query: 415 IRLTNAAARLRS 450
           +RLTN   RLRS
Sbjct: 132 VRLTNPNGRLRS 143


>Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  233 bits (570), Expect = 1e-61
 Identities = 107/130 (82%), Positives = 115/130 (88%)
 Frame = +1

Query: 61  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 240
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 241 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 420
           SNK+TRHMLP+GF+K LVHNVRELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 421 LTNAAARLRS 450
           LTN   RLRS
Sbjct: 121 LTNPNGRLRS 130


>U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  233 bits (570), Expect = 1e-61
 Identities = 107/130 (82%), Positives = 115/130 (88%)
 Frame = +1

Query: 61  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 240
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 241 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 420
           SNK+TRHMLP+GF+K LVHNVRELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 421 LTNAAARLRS 450
           LTN   RLRS
Sbjct: 121 LTNPNGRLRS 130


>AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p
           protein.
          Length = 134

 Score =  233 bits (570), Expect = 1e-61
 Identities = 107/130 (82%), Positives = 115/130 (88%)
 Frame = +1

Query: 61  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 240
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 241 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 420
           SNK+TRHMLP+GF+K LVHNVRELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 421 LTNAAARLRS 450
           LTN   RLRS
Sbjct: 121 LTNPNGRLRS 130


>AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB,
           isoform B protein.
          Length = 134

 Score =  233 bits (570), Expect = 1e-61
 Identities = 107/130 (82%), Positives = 115/130 (88%)
 Frame = +1

Query: 61  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 240
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 241 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 420
           SNK+TRHMLP+GF+K LVHNVRELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 421 LTNAAARLRS 450
           LTN   RLRS
Sbjct: 121 LTNPNGRLRS 130


>AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA,
           isoform A protein.
          Length = 134

 Score =  233 bits (570), Expect = 1e-61
 Identities = 107/130 (82%), Positives = 115/130 (88%)
 Frame = +1

Query: 61  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 240
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 241 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 420
           SNK+TRHMLP+GF+K LVHNVRELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 421 LTNAAARLRS 450
           LTN   RLRS
Sbjct: 121 LTNPNGRLRS 130


>X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 133

 Score =  184 bits (448), Expect = 6e-47
 Identities = 86/120 (71%), Positives = 98/120 (81%)
 Frame = +1

Query: 61  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 240
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRV RRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKDFIRHQSDRYAKLSHKWRKPKGIDNRVGRRFKGQYLMPNIGYG 60

Query: 241 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 420
           SNK+TRHMLP+GF+K LVHNVRELE+L+MQN +   E+    S  + K I+ERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNPRLLREMP-TASPPRSKEIIERAKQLSLR 119


>BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p
           protein.
          Length = 126

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 41/97 (42%), Positives = 52/97 (53%)
 Frame = +3

Query: 159 LA*TERYRQQST*ALQGSILDAQHWLWFK*EDPSHATQRFS*SLGPQRSRTGDPDDAEQE 338
           +A  + YRQQS   LQG++ DAQH L  +   P HA  R     G QR+R G P  AE  
Sbjct: 1   MAQAQGYRQQSASPLQGTVSDAQHRLRIEQAHPPHAAHRIQEVPGAQRARAGGPAHAEPR 60

Query: 339 ILRGNRTWRLLEKTEGYSRACPAAQHQADQRGRSSPF 449
           +LR +R  RLL++ +G  RA  AA     Q  RS  F
Sbjct: 61  LLRRDRPRRLLQEAQGDCRARQAAVGPPHQPQRSPAF 97


>AY128419-1|AAM75012.1|  741|Drosophila melanogaster GH14073p
           protein.
          Length = 741

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 373 SRRRHVRFPR-SISCSASSGSPVRERCGPRLYENRWVACDGSSYLNHNQCWASSIDP 206
           +RR  +R P  S  C  + G   +ERCG     +RW   +G   +N  +C  S  +P
Sbjct: 112 TRRGEIREPLVSFGCDETGGFLFQERCGSNATCSRWDQKEGK--INLTRCTYSCQNP 166


>AF239609-1|AAF63501.1|  741|Drosophila melanogaster SP1173 protein.
          Length = 741

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 373 SRRRHVRFPR-SISCSASSGSPVRERCGPRLYENRWVACDGSSYLNHNQCWASSIDP 206
           +RR  +R P  S  C  + G   +ERCG     +RW   +G   +N  +C  S  +P
Sbjct: 112 TRRGEIREPLVSFGCDETGGFLFQERCGSNATCSRWDQKEGK--INLTRCTYSCQNP 166


>AE014296-1144|AAN12079.1|  741|Drosophila melanogaster CG10121-PD,
           isoform D protein.
          Length = 741

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 373 SRRRHVRFPR-SISCSASSGSPVRERCGPRLYENRWVACDGSSYLNHNQCWASSIDP 206
           +RR  +R P  S  C  + G   +ERCG     +RW   +G   +N  +C  S  +P
Sbjct: 112 TRRGEIREPLVSFGCDETGGFLFQERCGSNATCSRWDQKEGK--INLTRCTYSCQNP 166


>AE014296-1143|AAN12078.1|  741|Drosophila melanogaster CG10121-PC,
           isoform C protein.
          Length = 741

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 373 SRRRHVRFPR-SISCSASSGSPVRERCGPRLYENRWVACDGSSYLNHNQCWASSIDP 206
           +RR  +R P  S  C  + G   +ERCG     +RW   +G   +N  +C  S  +P
Sbjct: 112 TRRGEIREPLVSFGCDETGGFLFQERCGSNATCSRWDQKEGK--INLTRCTYSCQNP 166


>AE014296-1142|AAF50650.1|  741|Drosophila melanogaster CG10121-PB,
           isoform B protein.
          Length = 741

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 373 SRRRHVRFPR-SISCSASSGSPVRERCGPRLYENRWVACDGSSYLNHNQCWASSIDP 206
           +RR  +R P  S  C  + G   +ERCG     +RW   +G   +N  +C  S  +P
Sbjct: 112 TRRGEIREPLVSFGCDETGGFLFQERCGSNATCSRWDQKEGK--INLTRCTYSCQNP 166


>AE014296-1141|AAN12077.1|  741|Drosophila melanogaster CG10121-PA,
           isoform A protein.
          Length = 741

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 373 SRRRHVRFPR-SISCSASSGSPVRERCGPRLYENRWVACDGSSYLNHNQCWASSIDP 206
           +RR  +R P  S  C  + G   +ERCG     +RW   +G   +N  +C  S  +P
Sbjct: 112 TRRGEIREPLVSFGCDETGGFLFQERCGSNATCSRWDQKEGK--INLTRCTYSCQNP 166


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,834,219
Number of Sequences: 53049
Number of extensions: 471258
Number of successful extensions: 1178
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)