Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M06
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...   163   5e-41
U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical pr...    33   0.12 
U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    30   1.1  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score =  163 bits (397), Expect = 5e-41
 Identities = 72/120 (60%), Positives = 99/120 (82%)
 Frame = +1

Query: 91  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 270
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVRRRF+G   MP IG+GS+++TR +LP
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70

Query: 271 SGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRLTNAAARLRS 450
           +G++KVLV NV++L++L+MQ+ KY  EI HGVS+K RK IVERA QL+I+LTN  ARLR+
Sbjct: 71  NGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTNGNARLRT 130


>U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical
           protein C14F11.4b protein.
          Length = 341

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
 Frame = +1

Query: 79  YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 252
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 253 TRHMLPSGFRKV--LVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRLT 426
             + L    +K+  ++  +R              ++A    +++ K I +R  +L   LT
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120

Query: 427 NAA 435
             A
Sbjct: 121 FVA 123


>U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical
           protein C14F11.4a protein.
          Length = 345

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
 Frame = +1

Query: 79  YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 252
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 253 TRHMLPSGFRKV--LVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRLT 426
             + L    +K+  ++  +R              ++A    +++ K I +R  +L   LT
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120


>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 211 QYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQN 333
           QYLM NI        R   PSGF K L+  +  L+I   QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,696,397
Number of Sequences: 27780
Number of extensions: 241720
Number of successful extensions: 625
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)