Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_M05
(433 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc... 96 2e-21
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S... 90 1e-19
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 31 0.057
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 27 0.93
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 25 3.8
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 3.8
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 5.0
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 6.6
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||... 24 8.7
>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 74
Score = 96.3 bits (229), Expect = 2e-21
Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Frame = +2
Query: 167 MPREIKDIKDFLLKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 343
MPR+I DIK FL ARRKDA S +IKKN ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1 MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60
Query: 344 LPPGLQVKEV 373
LPP L V EV
Sbjct: 61 LPPDLTVTEV 70
>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 1|||Manual
Length = 74
Score = 90.2 bits (214), Expect = 1e-19
Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Frame = +2
Query: 167 MPREIKDIKDFLLKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 343
MPR++ DIK FL A R DA S ++KKN VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1 MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60
Query: 344 LPPGLQVKEV 373
LPP L V EV
Sbjct: 61 LPPALTVTEV 70
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 31.5 bits (68), Expect = 0.057
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 227 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQVKEVK 376
KS+ + +N P+ K K + T+VITD+E ++ +KQ +P +Q EVK
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252
>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 0.93
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 283 SVPVHPRHHGQGEGRETETEFTSRSPG*GSE 375
+V H + HG+G GR E F +R+PG SE
Sbjct: 181 AVESHSKFHGKGNGR-VEIWFGARTPGGVSE 210
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 211 RFQQKIFDILDFTRHDEVCNVAHTVKQN 128
RF++KI D+L+ + +E ++H +N
Sbjct: 319 RFKEKILDLLEMKQQEENDRISHIEYEN 346
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 146 SDITHFIMPREIKDIKDFLLKARRKDAKS 232
SD+ + R++KD D + K RKD KS
Sbjct: 418 SDLKKYEKSRKLKDYIDDIRKGYRKDLKS 446
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/60 (21%), Positives = 28/60 (46%)
Frame = +2
Query: 98 PIIGLYLKLFILFYSVSDITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVR 277
PI+G+ L +L + HF + + + ++F + + ++ ++KN E K R
Sbjct: 101 PIVGVLGGLIVLVIIFYCLRHFKRKKFLAEQQEFERQFEEEKSRLAAVRKNTEQEKMGYR 160
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 6.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 167 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSR 286
+ RE + LKA RK+A+ V+ + P K+++ SR
Sbjct: 433 LEREKDEASKERLKAARKEAEQVEEETRPIREKYELEKSR 472
>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
3|||Manual
Length = 126
Score = 24.2 bits (50), Expect = 8.7
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -2
Query: 333 SFSAFSLSVMTRVY-----RNREQRTLNXXXXXXXXXFTDLASFLRAFNKKSLIS 184
++S++ V+ +V+ N+ R LN AS L A+NKKS IS
Sbjct: 36 TYSSYIYKVLKQVHPDTGISNQAMRILNSFVNDIFERIATEASKLAAYNKKSTIS 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,473,105
Number of Sequences: 5004
Number of extensions: 25876
Number of successful extensions: 69
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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