Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_M04
(302 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 41 3e-05
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 29 0.15
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 28 0.35
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 26 1.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 1.8
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 25 2.4
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 3.2
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 3.2
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 24 5.6
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 24 5.6
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 5.6
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 24 5.6
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo... 24 5.6
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 23 7.5
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p... 23 7.5
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac... 23 7.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 23 7.5
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch... 23 7.5
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 23 9.9
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 23 9.9
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 23 9.9
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c... 23 9.9
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 41.1 bits (92), Expect = 3e-05
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = +3
Query: 174 DNVGSQQMPQIRISLRGHSIVLMGQNTMMRKAI 272
DNV SQQM +R LRG + ++MG+NTM+R+A+
Sbjct: 31 DNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAM 63
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 29.1 bits (62), Expect = 0.15
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 128 SNCWTNTPNGFLVGCG 175
+NCW + PN + GCG
Sbjct: 276 TNCWVDAPNSYNAGCG 291
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 27.9 bits (59), Expect = 0.35
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 114 FVKNHPTVGRIPQMVS*WGADNVGSQQMPQIRISLRGHSIVLM 242
F +NH ++G IPQ W + S+ +IR SL + LM
Sbjct: 726 FYRNHNSLGSIPQEPFRWASVAEASRSAIEIRYSLLPYWYTLM 768
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 1.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 54 PYFTQSKMGREDKATWKSNY 113
PYF Q+ M D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 1.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 13 GLCVFVLSLNFSEVPTSLNPRWVGRTRLPGS 105
GLC + L+ + ++NP ++GR +LP +
Sbjct: 1971 GLCQSPILLDAPTIFVTMNPGYLGRFKLPSN 2001
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 2.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 183 LHCPHPTRKPFGVFVQQLD 127
+H PH KPFGV ++ LD
Sbjct: 324 VHKPHSVGKPFGVELKILD 342
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 24.6 bits (51), Expect = 3.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 194 DATDPYFIAWSQHCAHGPKHHDEESHQRPSLK 289
+ T P W +H H H D H+RPS K
Sbjct: 409 NGTKPDHKPW-KHEEHCSCHEDHSVHERPSAK 439
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 24.6 bits (51), Expect = 3.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 182 YIVRTPLGNHLGYSSNSWMIFNEVIGLPGSL 90
++ +GN + + SN W+I GL G L
Sbjct: 404 FVAWIAIGNVMHWDSNWWLIIGTYTGLVGFL 434
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 264 SSSWCFGP*AQCCDHAMKYGSVASVASLH 178
S S P ++ CD A KYG++ + +H
Sbjct: 317 SMSGNVAPISEICDLAKKYGAITFLDEVH 345
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 23.8 bits (49), Expect = 5.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 299 AGFVSKMVVDGFPH 258
A +VS+M GFPH
Sbjct: 485 ASYVSRMATQGFPH 498
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 15 SVRICLVLKFLRSP 56
SV++C VLK LRSP
Sbjct: 363 SVKVCHVLKELRSP 376
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 23.8 bits (49), Expect = 5.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 9 QRSVRICLVLKFLRSPYFTQSKMGREDKATWKSNYFV 119
QR + +C V PYF++ + D A W +FV
Sbjct: 17 QRGIMLCGV------PYFSEKSLLNFDPAPWVDQHFV 47
>SPMIT.08 |||mitochondrial ribosomal small
subunit|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 227
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 179 IVRTPLGNHLGYSSNSWMIFNEVIGLP 99
I++ L NHL YSS ++ + LP
Sbjct: 78 IIQKALSNHLLYSSKNYSFIVNIRALP 104
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 23.4 bits (48), Expect = 7.5
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = -1
Query: 206 DLWHLLRAYIVRTPLGNHLGY---SSNSW 129
DL HL RAY PL +GY S +SW
Sbjct: 1100 DLTHLHRAYKGLDPLKQIIGYPIRSVHSW 1128
>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 402
Score = 23.4 bits (48), Expect = 7.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 115 SLKIIQLLDEYPKWFPSGV 171
SL+ +Q L YP WF +G+
Sbjct: 203 SLRQLQGLFPYPVWFETGI 221
>SPAC821.12 |orb6||serine/threonine protein kinase
Orb6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 469
Score = 23.4 bits (48), Expect = 7.5
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 75 MGREDK-ATWKSNYFVKNHPTVG 140
M +DK ATWK N V + TVG
Sbjct: 272 MSSKDKMATWKKNRRVMAYSTVG 294
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 23.4 bits (48), Expect = 7.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 176 VRTPLGNHLGYSSNSWMIFNEVIGLPGSLVLPTHLGLSEVGTS 48
V TPL N Y S+ F+ + S ++PT S G++
Sbjct: 729 VSTPLSNSSAYPSSGSSTFSRLSSTLTSSIIPTETFGSTSGSA 771
>SPAC25B8.15c |||wybutosine biosynthesis protein
Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 237
Score = 23.4 bits (48), Expect = 7.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 4 RGRGLCVFVLSLNFSEVPTSLNPRWVGRTRLPGSPITSLKIIQ 132
+G G +FV E+P L V ++P SP+ + IQ
Sbjct: 72 KGGGYWLFVSHQAHEELPPVLEDEKVEYGKVPSSPVEGNREIQ 114
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 23.0 bits (47), Expect = 9.9
Identities = 8/30 (26%), Positives = 13/30 (43%)
Frame = +3
Query: 36 LKFLRSPYFTQSKMGREDKATWKSNYFVKN 125
L P F Q + +DK WK +++
Sbjct: 103 LNIAMRPIFPQHRYTEQDKKNWKKKVIIED 132
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 161 GNHLGYSSNSWMIFNEVIGL 102
GNH+GY S +I N + L
Sbjct: 929 GNHIGYYKPSKIIANRITSL 948
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 23.0 bits (47), Expect = 9.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 177 NVGSQQMPQIRISLRGHSIVLMGQNTMMRKAIND 278
NV +MP + LR + VL G+N M A+N+
Sbjct: 154 NVPIGRMP---VMLRSNKCVLSGKNEMEMAALNE 184
>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 115
Score = 23.0 bits (47), Expect = 9.9
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Frame = +3
Query: 42 FLRSPYFTQSKM---GREDKATWKSNYFVK 122
F FT+ K GR KAT K NY VK
Sbjct: 54 FSNGALFTEGKARDRGRWAKATMKKNYGVK 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,506,666
Number of Sequences: 5004
Number of extensions: 30775
Number of successful extensions: 87
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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