Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_M04
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 51 2e-07
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 51 2e-07
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 51 2e-07
12_02_0390 - 18510095-18510148,18510318-18512450,18513018-185136... 27 2.8
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 27 2.8
08_01_0459 - 4051250-4051405,4052044-4052353,4052454-4052767 26 6.5
01_06_1124 - 34679205-34680926,34681438-34682811 26 6.5
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 25 8.6
07_03_0662 + 20431448-20432767 25 8.6
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 25 8.6
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 25 8.6
07_01_0234 + 1715338-1718233,1718351-1718760 25 8.6
04_04_1568 - 34475707-34476822,34476894-34477083,34477330-344774... 25 8.6
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 25 8.6
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 51.2 bits (117), Expect = 2e-07
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +3
Query: 171 ADNVGSQQMPQIRISLRGHSIVLMGQNTMMRKAINDHL*N 290
ADNVGS Q+ +IR LRG SIVLMG+NT++R+ I H N
Sbjct: 33 ADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADN 72
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 51.2 bits (117), Expect = 2e-07
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +3
Query: 171 ADNVGSQQMPQIRISLRGHSIVLMGQNTMMRKAINDHL*N 290
ADNVGS Q+ +IR LRG SIVLMG+NT++R+ I H N
Sbjct: 33 ADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADN 72
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 51.2 bits (117), Expect = 2e-07
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +3
Query: 171 ADNVGSQQMPQIRISLRGHSIVLMGQNTMMRKAINDHL*N 290
ADNVGS Q+ +IR LRG SIVLMG+NT++R+ I H N
Sbjct: 33 ADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADN 72
>12_02_0390 -
18510095-18510148,18510318-18512450,18513018-18513681,
18514089-18514202,18514835-18514979,18515274-18515331
Length = 1055
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 209 TDLWHLLRAYIVRTPLGNHLGYSSNSWMIFNEVIGLPGSLVL 84
TD WHL + + + NH + + NE+ GLP +L++
Sbjct: 421 TDAWHLFKENVGTEIIKNHPLVLPLAKEVANELAGLPLALIV 462
>12_02_0388 -
18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 209 TDLWHLLRAYIVRTPLGNHLGYSSNSWMIFNEVIGLPGSLVL 84
TD WHL + + + NH + + NE+ GLP +L++
Sbjct: 318 TDAWHLFKENVGTEIIENHPLVLKLAKDVANELAGLPLALIV 359
>08_01_0459 - 4051250-4051405,4052044-4052353,4052454-4052767
Length = 259
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 54 PYFTQSKMGREDKATWKSNYFVKNHPTVG 140
P F GR ATW S V HP VG
Sbjct: 118 PEFVVETDGRRCLATWCSQEQVLRHPAVG 146
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 64 LNPRWVGRTRLPGSPITSLKIIQLLDEY 147
L+PR++GRT P I + +++ LL E+
Sbjct: 4 LSPRFLGRTSPPVDAIAARRLVALLLEH 31
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 210 YGSVASVASLHCPHP 166
YG +AS SL CP P
Sbjct: 417 YGGLASAGSLQCPRP 431
>07_03_0662 + 20431448-20432767
Length = 439
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 210 YGSVASVASLHCPHP 166
YG +AS SL CP P
Sbjct: 417 YGGLASAGSLQCPRP 431
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 25.4 bits (53), Expect = 8.6
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1
Query: 133 LLDEYPKWFP 162
+LD++PKWFP
Sbjct: 356 ILDQFPKWFP 365
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 25.4 bits (53), Expect = 8.6
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1
Query: 133 LLDEYPKWFP 162
+LD++PKWFP
Sbjct: 320 ILDQFPKWFP 329
>07_01_0234 + 1715338-1718233,1718351-1718760
Length = 1101
Score = 25.4 bits (53), Expect = 8.6
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +2
Query: 98 LEVQLLR*KSSNCWTNTPNGFLVGCGQCRLATDATDPYFIAWSQHCAHGPKHHDEESHQR 277
++ LL+ +C TN + RL TD P F C+H P DE R
Sbjct: 1022 VDSNLLQDCDKDCGTNHNDNAHEDAASSRLITDLLVPIFEVGLMCCSHAP---DE----R 1074
Query: 278 PSLKQI 295
P++K +
Sbjct: 1075 PTMKDV 1080
>04_04_1568 -
34475707-34476822,34476894-34477083,34477330-34477464,
34477571-34477668,34477789-34477979,34478784-34479286,
34480169-34481568,34481655-34481855
Length = 1277
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 196 CHRSVFHCVVTALCSWAKTP 255
CHR +F V +L WA P
Sbjct: 204 CHRGIFLITVDSLVDWAVPP 223
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 25.4 bits (53), Expect = 8.6
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1
Query: 133 LLDEYPKWFP 162
+LD++PKWFP
Sbjct: 322 ILDQFPKWFP 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,105,516
Number of Sequences: 37544
Number of extensions: 218980
Number of successful extensions: 530
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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