Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M04
         (302 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    77   3e-15
U10414-9|AAA19072.1|  712|Caenorhabditis elegans Hypothetical pr...    27   2.6  
AF045640-3|AAM81120.1|  344|Caenorhabditis elegans Hypothetical ...    27   2.6  
U39854-3|AAA81078.2|  263|Caenorhabditis elegans Hypothetical pr...    26   4.5  
U70857-5|AAB09171.1|   98|Caenorhabditis elegans Hypothetical pr...    26   6.0  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 36/70 (51%), Positives = 50/70 (71%)
 Frame = +3

Query: 75  MGREDKATWKSNYFVKNHPTVGRIPQMVS*WGADNVGSQQMPQIRISLRGHSIVLMGQNT 254
           M RED++TWK+NYF K        P+ +   G DNVGS+QM +IR ++RGH+ +LMG+NT
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLL-VGVDNVGSKQMQEIRQAMRGHAEILMGKNT 59

Query: 255 MMRKAINDHL 284
           M+RKA+  HL
Sbjct: 60  MIRKALRGHL 69


>U10414-9|AAA19072.1|  712|Caenorhabditis elegans Hypothetical
           protein F42A10.1 protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 9   QRSVRICLVLKFLRSPYFTQSKMGREDKATWKSNYFVKNHP 131
           Q SV +  V + +R  YFTQ  + + D  T      +KNHP
Sbjct: 548 QPSVGLRNVNRRIRIAYFTQHHVDQLDMETSAIEVLMKNHP 588


>AF045640-3|AAM81120.1|  344|Caenorhabditis elegans Hypothetical
           protein C11D2.4 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 123 NHPTVGRIPQMVS*WGADNVGSQQMPQIRISLRGHSIVLMGQNTMMRKAIND 278
           N      IP + + W   NVG +++ +I  S  GHSI L+       KAIND
Sbjct: 107 NKAIAAGIPVLSAEW-MKNVGREEIDRIFKSDSGHSIPLLDDRV---KAIND 154


>U39854-3|AAA81078.2|  263|Caenorhabditis elegans Hypothetical
           protein W06B11.1 protein.
          Length = 263

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 39  KFLRSPYFTQSKMGREDKATWKSNYFVKNHPTVGRIPQ 152
           +FL   Y  +  + + +K    SN+F+  HPTV   P+
Sbjct: 156 QFLEKYYDRKDLVWQSNKYALCSNFFIGRHPTVPFTPR 193


>U70857-5|AAB09171.1|   98|Caenorhabditis elegans Hypothetical
           protein C10G8.4 protein.
          Length = 98

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -2

Query: 223 PRNE-IRICGICCEPTLSAPH 164
           P NE  R CG  CEPT   P+
Sbjct: 41  PSNEEFRSCGTACEPTCQNPN 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,360,596
Number of Sequences: 27780
Number of extensions: 177401
Number of successful extensions: 505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)