Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M03
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        29   0.42 
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    28   1.3  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    27   2.9  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    27   2.9  
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    26   3.9  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   5.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   9.0  

>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 130 AVLCVTSDPEIGQMRQNEDSVEVQPSCPRS-WSAG 231
           +++CV+  P++ + RQ + +  +  S PR+ W AG
Sbjct: 207 SIMCVSKQPDLKKDRQRKSATRITVSLPRTDWLAG 241


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 488 NPTGSHTQSGVASVFPT*IRDICIRVLF 405
           +P  +H +  ++S+ PT +RD+C+ V F
Sbjct: 76  HPKRNHARQKLSSLAPTRLRDLCMDVFF 103


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 178 FDAFVQFRDRW*HRALRASPGS 113
           FDAFV+F ++W    + AS G+
Sbjct: 294 FDAFVEFEEQWLSARVEASSGN 315


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +1

Query: 160 IGQMRQNEDSVEVQPSCPRSWSAGARTARGTV 255
           +G+  Q  + ++   SCP +W+ G  + + T+
Sbjct: 520 VGEEHQGAEQIDKPFSCPPTWNTGPNSLQQTI 551


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 461 GVASVFPT*IRDICIRVLFFGHRDCIVPAFTARVHLLHEGHQPVP 327
           G+A+   T  R + + + F GH+D     +TA   +L EG    P
Sbjct: 298 GIANPVAT-FRSVALMLEFMGHQDAAADIYTAVDKVLTEGKVLTP 341


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 203 GCTSTLSSF*RICPISGSLVTQSTA 129
           GC  +LSSF +ICP +  L T   A
Sbjct: 218 GCLFSLSSFLKICPRNDCLQTVDVA 242


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 203 GCTSTLSSF*RICPISGSLVTQSTARFTGQSRMLSTALS 87
           G +S LSS     PIS SL T S++     S ++S++ S
Sbjct: 645 GSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSS 683


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 547 HMPQRNISLSPVPPA 591
           H P++NI+ +P+PP+
Sbjct: 390 HRPRKNINFTPLPPS 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,253
Number of Sequences: 5004
Number of extensions: 60673
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)