Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_M03
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0443 - 24379756-24379794,24379896-24379967,24380054-243801... 36 0.020
06_03_0117 + 16826133-16826600,16826650-16827201,16827310-168274... 31 0.75
06_01_0393 + 2831676-2831876,2831986-2832101,2832340-2832421,283... 30 1.7
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 30 1.7
03_05_0633 + 26276454-26277368 30 1.7
03_01_0074 + 610948-611184,611745-611867,611983-612082,612167-61... 30 1.7
01_05_0568 + 23339476-23339598,23339686-23339927,23340765-23341308 29 4.0
10_08_0767 + 20441959-20443152 28 5.3
03_05_0377 + 23613181-23613342,23614469-23614501,23614606-236148... 28 5.3
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 28 7.0
03_06_0209 - 32377045-32378008,32378086-32378210,32378772-323788... 28 7.0
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 28 7.0
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 27 9.2
02_03_0339 - 17909850-17910284 27 9.2
02_01_0496 + 3595388-3596185 27 9.2
>03_05_0443 -
24379756-24379794,24379896-24379967,24380054-24380161,
24380264-24380373,24381500-24381605
Length = 144
Score = 36.3 bits (80), Expect = 0.020
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -1
Query: 623 CSGVNIFRAECAGGTGLSEIFRCGMCAVTCVWPY--PSVGYKICQGINPTGSHTQSGVAS 450
CS VN+ R ++ + CG C T ++PY PSV IC I TG +T + S
Sbjct: 27 CSTVNLVRPV----NNIAHV-SCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVAPTPS 81
Query: 449 VFPT 438
PT
Sbjct: 82 PMPT 85
>06_03_0117 +
16826133-16826600,16826650-16827201,16827310-16827453,
16827543-16827959
Length = 526
Score = 31.1 bits (67), Expect = 0.75
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -1
Query: 383 VPAFTARVHLLHEGHQPVPVRCVQHV---RGVEQREVRGTVRNSAFTVPRAVRA 231
VP A HL H G P PV + V GV +R V GT R+ A V RA+ A
Sbjct: 93 VPLVLADAHLKHTGPPPPPVSEIDQVDGLGGVLRRAVDGT-RDVASAVSRALAA 145
>06_01_0393 +
2831676-2831876,2831986-2832101,2832340-2832421,
2832515-2832671,2832755-2832848,2833942-2834008,
2834464-2835009
Length = 420
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 328 GTGWCPSCRRCTRAVKAGTMQSRWPKNKTRIQISRI 435
G GWCP C+ + AV+ ++++ K +I+ R+
Sbjct: 103 GLGWCPYCKMASYAVEYRGVKTKEEKGTEQIEEQRV 138
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 297 DAADMLHAAYRHRLVPFMQEVYSSGESWYYAVAVAKEQ 410
D++ +LH A H L P EV S Y AVAV + Q
Sbjct: 381 DSSAVLHVAVSHGLFPVTHEVLSQVYDAYGAVAVQRAQ 418
>03_05_0633 + 26276454-26277368
Length = 304
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 278 LGLRAVRRRGHAARSVQAQAGALHAGGVLER*KLVLCSRGGQR 406
LGLR +R G ++A GA A GVL+ + L GG R
Sbjct: 85 LGLRGLRSSGRRRTELEAAEGAFAATGVLDEGERSLGPGGGTR 127
>03_01_0074 + 610948-611184,611745-611867,611983-612082,612167-612213,
612292-612450,613033-613132,613209-613300,613390-614532,
614949-615041,615408-615493,615746-615873,615965-616086,
616202-616270,616380-616518,616624-616686,616887-616930,
617339-617425
Length = 943
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 253 QCLVLCARQQTSSGDRKAALQRYPHFDAFVQFRDRW*HRALRASPGSPV 107
Q + C SG AA+ R+P FD F FR+ ++ + AS P+
Sbjct: 876 QATLGCCLNHMDSGYSHAAVIRFPSFDDFKIFREGMEYKDMWASTFQPI 924
>01_05_0568 + 23339476-23339598,23339686-23339927,23340765-23341308
Length = 302
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = -1
Query: 488 NPTGSHTQSGVASVFPT*IRDICIRVLFFGHRDCIVPAFTARVHLLHEGHQPVPVRCV-Q 312
NP+ + T + + D R++F G ++ A L+H P CV +
Sbjct: 167 NPSAAETLARTFFAMDPRVADALARMIFLGDNRGVLGRVAAPCTLVHASGDPAAPPCVGR 226
Query: 311 HVRGVEQREVRGTVRNSAFTVPRAVRAPADQLR 213
++ G R TV +SA P+ V AP + LR
Sbjct: 227 YMEGRIGRAALVTV-DSAGHFPQLV-APDEMLR 257
>10_08_0767 + 20441959-20443152
Length = 397
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 342 PFMQEVYSSGESWYYAVAVAKEQDPDTDITYLRGKNT 452
PF++ + G S YY + + + + D IT RG+NT
Sbjct: 227 PFVKTSPNDGMSQYYPIELEEIKAGDATITMPRGRNT 263
>03_05_0377 +
23613181-23613342,23614469-23614501,23614606-23614879,
23615105-23615585,23616174-23616846
Length = 540
Score = 28.3 bits (60), Expect = 5.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 337 WCPSCRRCTRAVKAGT 384
WCPS C RA++ GT
Sbjct: 221 WCPSAPHCGRAIQVGT 236
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 625 TVPESTYSEPSAPGAQDLVK--YSAAACAPSHAYGRI 521
+V E T +PSA A DL+ AA CAP G+I
Sbjct: 234 SVAEGTSDDPSASAAVDLINIILVAAECAPWSKTGKI 270
>03_06_0209 -
32377045-32378008,32378086-32378210,32378772-32378816,
32379009-32379295,32379778-32381509,32381631-32381971,
32383753-32383876,32384484-32384722,32385156-32385534
Length = 1411
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 353 LHEGHQPVPVRCVQHVRGVEQREVRGTVRNSAFTVPRAVRAPA 225
L+ +Q CVQ G + RE+ G+ N V AV APA
Sbjct: 726 LNYSNQAQQSACVQPASGSDGREIGGSSTNEGEEVLDAVTAPA 768
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 337 WCPSCRRCTRAVKAGTMQSRW 399
WCPS C RAV+ RW
Sbjct: 289 WCPSAPHCGRAVRVDGGGGRW 309
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 27.5 bits (58), Expect = 9.2
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Frame = +3
Query: 288 ALFDAADMLHAAYRHRLVPFMQEVYSSG----ESWYYAVAVAKE----QDPDT-DITYLR 440
+L +AAD + + R+ F ++ + ++ Y V VAK+ Q+P T DI
Sbjct: 262 SLIEAADHILTMFDKRITEFAEDKFGRDGIDVKTGYKVVKVAKDAITMQNPATGDIAVPY 321
Query: 441 GKNTCHTGLG---MAAGWVYPLAY-----LISNGWIRPYACDGAHAAAEYFT 572
G TG+G + ++ + L ++ W+R CDG +A + T
Sbjct: 322 GMAVWSTGIGTRPFISEFMKQIGQGKRRVLATDEWLRVRECDGVYAVGDCAT 373
>02_03_0339 - 17909850-17910284
Length = 144
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 272 RCLGLRAV-RRRGHAARSVQAQA--GALHAGGVLER*KLVLCSRGGQRTRP 415
RC+G V RR AR A A G L G ++ + +CSRGG RP
Sbjct: 28 RCVGGGVVGRREAEVARLAAAAAASGDLRGGRIVAQ----VCSRGGGHARP 74
>02_01_0496 + 3595388-3596185
Length = 265
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 598 PSAPGAQDLV--KYSAAACAPSHAYGRIHPLDI 506
PS G +DLV +AAA A +HA G + PL +
Sbjct: 231 PSGGGGEDLVLAMAAAAAAAEAHAAGCMMPLSV 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,297,604
Number of Sequences: 37544
Number of extensions: 497607
Number of successful extensions: 1483
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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