Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_M02
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 33 0.036
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 28 0.78
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 28 1.0
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 27 1.4
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 27 1.4
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 27 1.4
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 1.8
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 25 5.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.3
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 25 7.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.3
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha... 25 9.6
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 9.6
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.6
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 32.7 bits (71), Expect = 0.036
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +3
Query: 138 SQQLMKLATQPAVAQRTITSTLPIRSLVVKEAKSTPILNSVRAFRTSMVRLSGEKAHDHS 317
+ +L LA ++ R + LP +SLV KEA ++NS F + + SGE A +++
Sbjct: 9 TSELDDLALPRSIIMRLVKGVLPEKSLVQKEALKA-MINSATLFVSFLTSASGEIATNNN 67
Query: 318 KLWVIEKAVSLAL 356
+ ++ + V AL
Sbjct: 68 RKILMPQDVLNAL 80
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 28.3 bits (60), Expect = 0.78
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 154 FISCWENTRLVHAGVRKNIEKASY 83
F+S + +H GVRKN+EK Y
Sbjct: 87 FVSLYNKLLRIHMGVRKNLEKNFY 110
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 393 KLFD-SLVAILITAHSFWGLEAIAVPHVRASMFGPVIPKIAIGL 521
+LFD S +A LI AH+ W L + + H ++G V+ K + L
Sbjct: 277 ELFDFSPIANLIDAHALWHLSTVPITHY---LYGFVVRKCSYDL 317
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 89 GLLNVFSDTSMHESGILPAADEACDAAGSRSTHHNKHSSHKES 217
G +N +S+ H + D+ GS ++ N H++H ES
Sbjct: 34 GSVNEYSEQQRHGTNSFNGKPSVHDSVGSDASVSNGHNNHNES 76
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 518 AYRNFGYDGTEHTRPYVRYGNR 453
AYR+FG+ +H PYVR R
Sbjct: 150 AYRHFGFGPHKHKAPYVRSEGR 171
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 518 AYRNFGYDGTEHTRPYVRYGNR 453
AYR+FG+ +H PYVR R
Sbjct: 150 AYRHFGFGPHKHKAPYVRSEGR 171
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 83 VTGLLNVFSDTS--MHESGILPAADEACDAAGSRST 184
V L+ + D+S MH S ++ A C GS+ST
Sbjct: 807 VVTLIGILKDSSLSMHHSSVVQAVMHICSQMGSKST 842
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 111 TPACTSRVFSQQLMKLATQPAVAQRTITSTLPIRSLVVKEAKS 239
TPACT+R F ++ + + + ++ T I +KE KS
Sbjct: 396 TPACTTRGFDEKDFERVVE--LIDEVVSLTKKINEAALKEGKS 436
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/60 (23%), Positives = 24/60 (40%)
Frame = +2
Query: 50 SLNSVLRKKTIVTGLLNVFSDTSMHESGILPAADEACDAAGSRSTHHNKHSSHKESCGQR 229
S +S + + S +S S L ++ + S S+H + SSHK S +
Sbjct: 354 SFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSK 413
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 471 VRASMFGPVIPKIAIGLVYLV 533
+ ++MFGP P+ +GL Y++
Sbjct: 125 INSAMFGPQNPRTIVGLNYVI 145
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 165 QPAVAQRTITSTLPIRSLVVKEAKSTPILNSVRAF 269
Q A+ TIT TLP+ + E +S + N F
Sbjct: 3575 QTTFAKDTITITLPLNIIFFSEVQSNELENKASKF 3609
>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
Isp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 178 ATAGCVASFISCWENTRLVHAGVRKNIEKASYD 80
A+ C A + ++ + HAG+R ++ A YD
Sbjct: 19 ASTACAAPVMPATDSD-IAHAGIRPELDNAFYD 50
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 349 KDTAFSITHSFEWS*AFSPDS 287
KD A+S+ EW+ A+SPDS
Sbjct: 533 KDEAYSL--GMEWANAYSPDS 551
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 210 RSLVVKEAKSTPILNSVRAFRTSMVRLSGEKAHD 311
R L V + P+L++ A + +M G AHD
Sbjct: 524 RDLSVHNVGTLPVLSAAAATQAAMPHTMGPSAHD 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,085
Number of Sequences: 5004
Number of extensions: 48443
Number of successful extensions: 127
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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