Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M02
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0164 + 20484911-20485147,20486639-20487150,20487311-204873...    29   2.4  
01_06_1767 + 39766350-39766508,39766602-39766654,39766763-397668...    29   2.4  
04_04_0054 + 22400278-22400420,22400545-22401037                       28   5.6  
03_05_0799 + 27809301-27811550                                         28   5.6  
12_02_0277 + 16682836-16684368                                         27   7.4  
12_02_0275 + 16662206-16663738                                         27   7.4  
02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495     27   9.8  

>02_04_0164 +
           20484911-20485147,20486639-20487150,20487311-20487399,
           20487586-20487770,20487856-20487894,20488000-20488038
          Length = 366

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/68 (25%), Positives = 27/68 (39%)
 Frame = +3

Query: 120 CTSRVFSQQLMKLATQPAVAQRTITSTLPIRSLVVKEAKSTPILNSVRAFRTSMVRLSGE 299
           C  R     L+K  +   V + + TST P      +    TPI+N++       V+  G 
Sbjct: 235 CRLRAVDTSLLKCYSLMTVKEWSTTSTTPCGPAKTRSTLCTPIINTIDEAWAQYVQRGGL 294

Query: 300 KAHDHSKL 323
           +   H  L
Sbjct: 295 RKTGHDTL 302


>01_06_1767 +
           39766350-39766508,39766602-39766654,39766763-39766829,
           39766929-39766984,39767287-39767791,39767981-39768069,
           39768678-39768768,39769052-39769177,39769256-39769513,
           39769748-39770029
          Length = 561

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +2

Query: 62  VLRKKTIVTGLLNVFSDTSMHESGILPAADEACDAAGSRSTHHNKHSSHKESCGQRG*IY 241
           VL ++ +V   L    +     + +    D+  D   S S+     +    S G+R    
Sbjct: 77  VLSEEELVERALREAMEEGWDSTALSQLEDQRIDGGMSASSTFGNGAITSSSSGERETSR 136

Query: 242 AHTQFGACIPHVHG 283
           + T+  A IPHVHG
Sbjct: 137 SPTEDTASIPHVHG 150


>04_04_0054 + 22400278-22400420,22400545-22401037
          Length = 211

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 222 PQDSLWEECLLWCVERLPAASQASSAAGRIPDSCMLVSEKTLRR 91
           P+ + +  C  WC+ R PA + A+ AAG +    M+    T+RR
Sbjct: 55  PRATAYRRCN-WCLVREPAPAAAAGAAGHV--HAMVDKPTTVRR 95


>03_05_0799 + 27809301-27811550
          Length = 749

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 248 YGRRFSLFDHKTPYGKSACYGALSDCRL 165
           YGRR  + +H+TP   +A YG+L+  RL
Sbjct: 86  YGRR-KVLEHRTPLMVAATYGSLAVLRL 112


>12_02_0277 + 16682836-16684368
          Length = 510

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -3

Query: 251 EYG----RRFSLFDHKTPYGKSACYGALSDCRLRRKLHQLLGEYP 129
           EYG    RR  +FD  + Y +SAC G  S  +L+ KL   +G+ P
Sbjct: 57  EYGEERFRRNKMFDAVSTYLRSACLG--SATKLKAKLGNNIGDDP 99


>12_02_0275 + 16662206-16663738
          Length = 510

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -3

Query: 251 EYG----RRFSLFDHKTPYGKSACYGALSDCRLRRKLHQLLGEYP 129
           EYG    RR  +FD  + Y +SAC G  S  +L+ KL   +G+ P
Sbjct: 57  EYGEERFRRNKMFDAVSTYLRSACLG--SATKLKAKLGNNIGDDP 99


>02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495
          Length = 593

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 195 LLWCVERLPAASQASSAAGRIPDS 124
           LLWC+  LPA +++ SAA   P S
Sbjct: 13  LLWCLCALPAPARSQSAATPAPAS 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,253,503
Number of Sequences: 37544
Number of extensions: 320736
Number of successful extensions: 812
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)