Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M02
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-4|CAB04259.1|  145|Caenorhabditis elegans Hypothetical pr...    53   1e-07
U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine rece...    27   8.8  

>Z81525-4|CAB04259.1|  145|Caenorhabditis elegans Hypothetical
           protein F33A8.5 protein.
          Length = 145

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
 Frame = +3

Query: 231 AKSTPILNS-VRAFRTSMVRLSGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDS 407
           A+S P +++ VRA  TS +     K  DHS  + +E+  ++ ++P++P +  +   + D+
Sbjct: 18  ARSAPRISTIVRA--TSTLNDGASKVPDHSMHFKLERLWAVGMLPILPASYFIHGPVMDA 75

Query: 408 LVAILITAHSFWGLEAIAVPHVRASMFGPVIPKIAIGLVYLVS 536
           ++ + +T H  WG+  +   + R  + G    K A   VYL++
Sbjct: 76  VLTVALTLHIHWGIHGVVYDYARPYVIGEAAAKAAHVGVYLIT 118


>U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine
           receptor, class v protein29 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 253 LSMGVDLASLTTRLLMGRVLVMVR*ATAGCVASFISCWENTRLVHAGVRKNIEK 92
           + + V    +T   LM  + V +      CVAS++  W   R   AG+ K++++
Sbjct: 164 MELVVSRGIITRNTLMALITVAI--TCLICVASYVIMWITLRKHSAGITKSVQR 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,894,332
Number of Sequences: 27780
Number of extensions: 270441
Number of successful extensions: 639
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)