Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_M02
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.7  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +3

Query: 288 LSGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGL 449
           +SGEKA++ + + V +   +  ++   P  +M   +  D+    +   +S+WG+
Sbjct: 289 MSGEKANEVATILVDDCGCNSTMLNENPARVMACMRSVDAKTISVQQWNSYWGI 342


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +3

Query: 288 LSGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGL 449
           +SGEKA++ + + V +   +  ++   P  +M   +  D+    +   +S+WG+
Sbjct: 289 MSGEKANEVATILVDDCGCNSTMLNENPARVMACMRSVDAKTISVQQWNSYWGI 342


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -3

Query: 500 YDGTEHTRPYVRYGNRL*TPEAMRGDENRD 411
           YD T    PY  Y     +   +  +ENRD
Sbjct: 328 YDNTPRDFPYYMYSREQYSQSHLISNENRD 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,602
Number of Sequences: 438
Number of extensions: 3242
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)