Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L24
         (505 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for ...   237   1e-62
BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.       237   1e-62
BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11 p...   237   1e-62
BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11 p...   237   1e-62
BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11 p...   237   1e-62
BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.       237   1e-62
BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11 p...   237   1e-62
BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11 p...   237   1e-62
AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11 p...   237   1e-62
AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11 p...   138   8e-33
U52144-1|AAC50455.1|  419|Homo sapiens isocitrate dehydrogenase ...    42   0.001

>X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for
           ribosomal protein S11. ).
          Length = 158

 Score =  237 bits (581), Expect = 1e-62
 Identities = 113/143 (79%), Positives = 127/143 (88%), Gaps = 6/143 (4%)
 Frame = +3

Query: 12  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 173
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 174 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 353
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 354 EIGDIVTIGECRPLSKTVRFNVL 422
           +IGDIVT+GECRPLSKTVRFNVL
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVL 143


>BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  237 bits (581), Expect = 1e-62
 Identities = 113/143 (79%), Positives = 127/143 (88%), Gaps = 6/143 (4%)
 Frame = +3

Query: 12  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 173
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 174 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 353
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 354 EIGDIVTIGECRPLSKTVRFNVL 422
           +IGDIVT+GECRPLSKTVRFNVL
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVL 143


>BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  237 bits (581), Expect = 1e-62
 Identities = 113/143 (79%), Positives = 127/143 (88%), Gaps = 6/143 (4%)
 Frame = +3

Query: 12  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 173
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 174 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 353
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 354 EIGDIVTIGECRPLSKTVRFNVL 422
           +IGDIVT+GECRPLSKTVRFNVL
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVL 143


>BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  237 bits (581), Expect = 1e-62
 Identities = 113/143 (79%), Positives = 127/143 (88%), Gaps = 6/143 (4%)
 Frame = +3

Query: 12  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 173
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 174 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 353
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 354 EIGDIVTIGECRPLSKTVRFNVL 422
           +IGDIVT+GECRPLSKTVRFNVL
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVL 143


>BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  237 bits (581), Expect = 1e-62
 Identities = 113/143 (79%), Positives = 127/143 (88%), Gaps = 6/143 (4%)
 Frame = +3

Query: 12  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 173
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 174 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 353
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 354 EIGDIVTIGECRPLSKTVRFNVL 422
           +IGDIVT+GECRPLSKTVRFNVL
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVL 143


>BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  237 bits (581), Expect = 1e-62
 Identities = 113/143 (79%), Positives = 127/143 (88%), Gaps = 6/143 (4%)
 Frame = +3

Query: 12  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 173
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 174 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 353
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 354 EIGDIVTIGECRPLSKTVRFNVL 422
           +IGDIVT+GECRPLSKTVRFNVL
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVL 143


>BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  237 bits (581), Expect = 1e-62
 Identities = 113/143 (79%), Positives = 127/143 (88%), Gaps = 6/143 (4%)
 Frame = +3

Query: 12  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 173
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 174 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 353
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 354 EIGDIVTIGECRPLSKTVRFNVL 422
           +IGDIVT+GECRPLSKTVRFNVL
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVL 143


>BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  237 bits (581), Expect = 1e-62
 Identities = 113/143 (79%), Positives = 127/143 (88%), Gaps = 6/143 (4%)
 Frame = +3

Query: 12  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 173
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 174 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 353
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 354 EIGDIVTIGECRPLSKTVRFNVL 422
           +IGDIVT+GECRPLSKTVRFNVL
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVL 143


>AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  237 bits (581), Expect = 1e-62
 Identities = 113/143 (79%), Positives = 127/143 (88%), Gaps = 6/143 (4%)
 Frame = +3

Query: 12  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 173
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 174 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 353
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 354 EIGDIVTIGECRPLSKTVRFNVL 422
           +IGDIVT+GECRPLSKTVRFNVL
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVL 143


>AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11
           protein.
          Length = 83

 Score =  138 bits (335), Expect = 8e-33
 Identities = 62/68 (91%), Positives = 66/68 (97%)
 Frame = +3

Query: 219 VVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLS 398
           VV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLS
Sbjct: 1   VVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLS 60

Query: 399 KTVRFNVL 422
           KTVRFNVL
Sbjct: 61  KTVRFNVL 68


>U52144-1|AAC50455.1|  419|Homo sapiens isocitrate dehydrogenase
           protein.
          Length = 419

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = -3

Query: 428 DLQYIEPDCLGKRPALANCDDVSDFHV 348
           DL+++E  CL +RPALA+CDDV+D  V
Sbjct: 18  DLEHVEAHCLAQRPALAHCDDVTDLDV 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,156,967
Number of Sequences: 237096
Number of extensions: 1607794
Number of successful extensions: 7096
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7087
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)