Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L24
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   202   1e-52
AL031629-5|CAA20979.1|   99|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    27   7.7  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   7.7  
AL132860-25|CAB60510.1|  413|Caenorhabditis elegans Hypothetical...    27   7.7  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  202 bits (493), Expect = 1e-52
 Identities = 95/140 (67%), Positives = 111/140 (79%), Gaps = 3/140 (2%)
 Frame = +3

Query: 12  MADQTEKAFQKQATVFLNRKGGM---KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFT 182
           M++QTE+AF KQ TV LN K  +    +K  R+ + VGLGFK PR+AVEGTYIDKKCP+ 
Sbjct: 1   MSEQTERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWA 60

Query: 183 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIG 362
           GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H SP FRD+  G
Sbjct: 61  GNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPG 120

Query: 363 DIVTIGECRPLSKTVRFNVL 422
           D+VTIGECRPLSKTVRFNVL
Sbjct: 121 DLVTIGECRPLSKTVRFNVL 140


>AL031629-5|CAA20979.1|   99|Caenorhabditis elegans Hypothetical
           protein Y106G6D.6 protein.
          Length = 99

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 223 FRK*KCSEQLLSGAIISITCLNTTDL 300
           F   KC EQ +SG +++  C NT DL
Sbjct: 45  FHANKCFEQNVSGQLLTFCCCNTDDL 70


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 265 SRLITIVRCIFIF*TTPVRIRPRMDTLPVNGHFLSMYVPSTASRGVLK 122
           ++ +T  +   +  TTPV++ P   TLP     L++   +TA+R   K
Sbjct: 341 TKRLTTTKATTVLTTTPVKVTPATTTLPTTS--LALETTTTATRTTAK 386


>Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical
           protein R08A2.4 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 317 VPVSLLKSVVFRQVMEIIAPDNNCSLHFHFLNNACQD 207
           + +SLL+ +   QV+  I P+   +L+FH  +  C D
Sbjct: 148 IDISLLEYLQAVQVLTYIHPETLKTLNFHIYSEKCND 184


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 257 DNNCSLHFHFLNNACQDTASD 195
           DN C L+   +NN CQ T S+
Sbjct: 169 DNTCGLNQRCVNNMCQSTGSN 189


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 9    NMADQTEKAFQKQATVFLNR 68
            NM+D+TEK+F+    + LNR
Sbjct: 3332 NMSDETEKSFEIPRNILLNR 3351


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 9    NMADQTEKAFQKQATVFLNR 68
            NM+D+TEK+F+    + LNR
Sbjct: 3332 NMSDETEKSFEIPRNILLNR 3351


>AL132860-25|CAB60510.1|  413|Caenorhabditis elegans Hypothetical
           protein Y56A3A.31 protein.
          Length = 413

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 81  SCPPCD*GTPSPVSETLSLSDPPYSS 4
           S PP   GTPS  S+T + S PP S+
Sbjct: 28  SSPPGAAGTPSAASQTPTTSTPPSST 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,361,133
Number of Sequences: 27780
Number of extensions: 257591
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)