Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L23
         (715 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC023021-1|AAH23021.1|  731|Homo sapiens golgi autoantigen, golg...    39   0.020
AY644768-1|AAV85456.1|  731|Homo sapiens cell proliferation-indu...    39   0.020
AF085199-1|AAD09753.1|  731|Homo sapiens golgin-84 protein.            39   0.020
AB210001-1|BAE06083.1| 2845|Homo sapiens APC variant protein pro...    38   0.047
M74088-1|AAA03586.1| 2843|Homo sapiens APC protein.                    35   0.25 
M73548-2|AAA60354.1| 2743|Homo sapiens polyposis locus-encoded p...    35   0.25 
M73548-1|AAA60353.1| 2844|Homo sapiens polyposis locus-encoded p...    35   0.25 

>BC023021-1|AAH23021.1|  731|Homo sapiens golgi autoantigen, golgin
           subfamily a, 5 protein.
          Length = 731

 Score = 38.7 bits (86), Expect = 0.020
 Identities = 25/61 (40%), Positives = 34/61 (55%)
 Frame = +1

Query: 388 KDNEDYKLSNNKNNRTIFNDSQSKNEPNLQNATEKTTTQDYSVIPLELISTTENKLISIL 567
           +D E  KL N   N+T+ N SQS+ E  L   TE T  Q  ++  LE +ST +N L+  L
Sbjct: 563 RDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTE-TLIQKQTM--LESLSTEKNSLVFQL 619

Query: 568 E 570
           E
Sbjct: 620 E 620


>AY644768-1|AAV85456.1|  731|Homo sapiens cell
           proliferation-inducing gene 31 protein.
          Length = 731

 Score = 38.7 bits (86), Expect = 0.020
 Identities = 25/61 (40%), Positives = 34/61 (55%)
 Frame = +1

Query: 388 KDNEDYKLSNNKNNRTIFNDSQSKNEPNLQNATEKTTTQDYSVIPLELISTTENKLISIL 567
           +D E  KL N   N+T+ N SQS+ E  L   TE T  Q  ++  LE +ST +N L+  L
Sbjct: 563 RDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTE-TLIQKQTM--LESLSTEKNSLVFQL 619

Query: 568 E 570
           E
Sbjct: 620 E 620


>AF085199-1|AAD09753.1|  731|Homo sapiens golgin-84 protein.
          Length = 731

 Score = 38.7 bits (86), Expect = 0.020
 Identities = 25/61 (40%), Positives = 34/61 (55%)
 Frame = +1

Query: 388 KDNEDYKLSNNKNNRTIFNDSQSKNEPNLQNATEKTTTQDYSVIPLELISTTENKLISIL 567
           +D E  KL N   N+T+ N SQS+ E  L   TE T  Q  ++  LE +ST +N L+  L
Sbjct: 563 RDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTE-TLIQKQTM--LESLSTEKNSLVFQL 619

Query: 568 E 570
           E
Sbjct: 620 E 620


>AB210001-1|BAE06083.1| 2845|Homo sapiens APC variant protein protein.
          Length = 2845

 Score = 37.5 bits (83), Expect = 0.047
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
 Frame = +1

Query: 319  NKKYDTQWHGNNFNKDSYRYT-VIKDNEDYKLSNNKNNRTIFNDSQSKNEPNLQNATEKT 495
            N +Y T+   N  +K++     V  DN+D K  N KNN  +FND    NE  ++ +    
Sbjct: 1784 NTEYRTRVRKNADSKNNLNAERVFSDNKDSKKQNLKNNSKVFNDKLPNNEDRVRGSFAFD 1843

Query: 496  TTQDYSVIPLELISTTENKLISILE-STTESDLS 594
            +   Y+ I       + N  +S L+    + DLS
Sbjct: 1844 SPHHYTPIEGTPYCFSRNDSLSSLDFDDDDVDLS 1877


>M74088-1|AAA03586.1| 2843|Homo sapiens APC protein.
          Length = 2843

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = +1

Query: 319  NKKYDTQWHGNNFNKDSYRYT-VIKDNEDYKLSNNKNNRTIFNDSQSKNEPNLQNATEKT 495
            N +Y T+   N  +K++     V  DN+D K  N KNN   FND    NE  ++ +    
Sbjct: 1782 NTEYRTRVRKNADSKNNLNAERVFSDNKDSKKQNLKNNSKDFNDKLPNNEDRVRGSFAFD 1841

Query: 496  TTQDYSVIPLELISTTENKLISILE-STTESDLS 594
            +   Y+ I       + N  +S L+    + DLS
Sbjct: 1842 SPHHYTPIEGTPYCFSRNDSLSSLDFDDDDVDLS 1875


>M73548-2|AAA60354.1| 2743|Homo sapiens polyposis locus-encoded
            protein protein.
          Length = 2743

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = +1

Query: 319  NKKYDTQWHGNNFNKDSYRYT-VIKDNEDYKLSNNKNNRTIFNDSQSKNEPNLQNATEKT 495
            N +Y T+   N  +K++     V  DN+D K  N KNN   FND    NE  ++ +    
Sbjct: 1682 NTEYRTRVRKNADSKNNLNAERVFSDNKDSKKQNLKNNSKDFNDKLPNNEDRVRGSFAFD 1741

Query: 496  TTQDYSVIPLELISTTENKLISILE-STTESDLS 594
            +   Y+ I       + N  +S L+    + DLS
Sbjct: 1742 SPHHYTPIEGTPYCFSRNDSLSSLDFDDDDVDLS 1775


>M73548-1|AAA60353.1| 2844|Homo sapiens polyposis locus-encoded
            protein protein.
          Length = 2844

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = +1

Query: 319  NKKYDTQWHGNNFNKDSYRYT-VIKDNEDYKLSNNKNNRTIFNDSQSKNEPNLQNATEKT 495
            N +Y T+   N  +K++     V  DN+D K  N KNN   FND    NE  ++ +    
Sbjct: 1783 NTEYRTRVRKNADSKNNLNAERVFSDNKDSKKQNLKNNSKDFNDKLPNNEDRVRGSFAFD 1842

Query: 496  TTQDYSVIPLELISTTENKLISILE-STTESDLS 594
            +   Y+ I       + N  +S L+    + DLS
Sbjct: 1843 SPHHYTPIEGTPYCFSRNDSLSSLDFDDDDVDLS 1876


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,203,941
Number of Sequences: 237096
Number of extensions: 1255341
Number of successful extensions: 2540
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2535
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)